Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85508 | Canola | cytosol | 47.35 | 64.11 |
| CDY67201 | Canola | cytosol | 54.77 | 63.79 |
| CDX69451 | Canola | cytosol | 57.6 | 63.18 |
| CDY38122 | Canola | cytosol | 58.3 | 62.98 |
| AT5G16330.1 | Thale cress | cytosol | 53.71 | 62.81 |
| CDY55574 | Canola | cytosol | 55.83 | 62.45 |
| AT3G02700.1 | Thale cress | cytosol | 55.12 | 61.9 |
| Bra023560.1-P | Field mustard | cytosol | 62.54 | 61.03 |
| VIT_04s0069g01180.t01 | Wine grape | cytosol | 50.88 | 59.02 |
| KRG98048 | Soybean | cytosol | 49.12 | 57.2 |
| KRG98046 | Soybean | cytosol | 29.68 | 56.0 |
| Bra008623.1-P | Field mustard | cytosol | 55.48 | 53.95 |
| GSMUA_Achr7P05990_001 | Banana | cytosol | 47.35 | 52.76 |
| CDX78683 | Canola | cytosol | 55.12 | 51.83 |
| KRH30736 | Soybean | cytosol, peroxisome, plastid | 36.4 | 51.5 |
| Solyc02g081580.2.1 | Tomato | cytosol | 49.12 | 51.48 |
| KRH30737 | Soybean | cytosol | 45.23 | 51.0 |
| CDX70687 | Canola | plastid | 47.35 | 50.76 |
| PGSC0003DMT400045756 | Potato | cytosol | 48.41 | 50.74 |
| AT5G06370.1 | Thale cress | cytosol | 44.52 | 48.65 |
| KXG36301 | Sorghum | cytosol | 47.0 | 47.33 |
| VIT_00s0270g00030.t01 | Wine grape | cytosol | 45.23 | 45.88 |
| Os05t0310600-01 | Rice | cytosol | 45.23 | 45.55 |
| HORVU5Hr1G043560.3 | Barley | mitochondrion | 45.94 | 43.48 |
| AT1G01225.1 | Thale cress | cytosol | 39.93 | 43.46 |
| Zm00001d021614_P001 | Maize | mitochondrion | 47.0 | 43.32 |
| AT4G00905.1 | Thale cress | cytosol | 38.87 | 41.83 |
| TraesCS5D01G142500.1 | Wheat | mitochondrion | 45.58 | 41.21 |
| TraesCS5A01G135900.1 | Wheat | mitochondrion | 45.94 | 37.46 |
| KRG98047 | Soybean | cytosol, golgi, peroxisome | 9.54 | 24.32 |
Protein Annotations
| Gene3D:3.90.1720.10 | MapMan:35.2 | EntrezGene:831497 | UniProt:A0A178UFJ2 | ProteinID:AED92283.1 | ArrayExpress:AT5G16360 |
| EnsemblPlantsGene:AT5G16360 | RefSeq:AT5G16360 | TAIR:AT5G16360 | RefSeq:AT5G16360-TAIR-G | EnsemblPlants:AT5G16360.1 | TAIR:AT5G16360.1 |
| ProteinID:BAB09603.1 | EMBL:BT002837 | EMBL:BT004369 | InterPro:LRAT-like_dom | RefSeq:NP_197140.1 | ProteinID:OAO92389.1 |
| PFAM:PF04970 | PO:PO:0000293 | PANTHER:PTHR13943 | PANTHER:PTHR13943:SF41 | UniProt:Q9FFE7 | UniParc:UPI000000BDED |
| SEG:seg | : | : | : | : | : |
Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9FFE7]
Coordinates
chr5:-:5354876..5356353
Molecular Weight (calculated)
30362.3 Da
IEP (calculated)
7.141
GRAVY (calculated)
0.040
Length
283 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLFSHKISR DDLKPGDHIY SWRNAYIYSH HGVYVGDEKV IHFTRGGGLE FGTGTVLDKI IDISIPNHGR RDKKCIDCGD QSNLGGVISS CLDCFLAGGN
101: LHLFEYSASP SIFLAKRGGT CTIASSDPCD EVISRAKFLL LQNGFGEYDL LDNNCEDFAI YCKTGLFVLS VATKFGCSGQ ANSVSAAGGV VALTLKVLGV
201: KKKSSSGHED DSVVSVVNQF ISSTVKYVVP GIGGLALAEY GNYCIGRLFY DIGVRKDACK VSVEELVAFV GAKQNILEGK KSN
101: LHLFEYSASP SIFLAKRGGT CTIASSDPCD EVISRAKFLL LQNGFGEYDL LDNNCEDFAI YCKTGLFVLS VATKFGCSGQ ANSVSAAGGV VALTLKVLGV
201: KKKSSSGHED DSVVSVVNQF ISSTVKYVVP GIGGLALAEY GNYCIGRLFY DIGVRKDACK VSVEELVAFV GAKQNILEGK KSN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.