CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85508	Canola	cytosol	67.94	85.17
Bra023560.1-P	Field mustard	cytosol	85.5	77.24
CDY67201	Canola	cytosol	67.94	73.25
CDX69451	Canola	cytosol	69.85	70.93
CDY55574	Canola	cytosol	67.18	69.57
CDX70686	Canola	cytosol	56.11	61.25
VIT_04s0069g01180.t01	Wine grape	cytosol	56.11	60.25
CDX78682	Canola	cytosol	54.58	60.08
KRG98048	Soybean	cytosol	54.2	58.44
AT5G16360.1	Thale cress	cytosol	62.98	58.3
AT5G16330.1	Thale cress	cytosol	53.82	58.26
CDY38121	Canola	cytosol	48.09	55.26
CDY53737	Canola	cytosol	59.16	54.96
KRH30736	Soybean	cytosol, peroxisome, plastid	41.22	54.0
CDY72287	Canola	cytosol	53.44	53.64
CDY55575	Canola	cytosol	51.91	53.54
KRG98046	Soybean	cytosol	30.53	53.33
CDX70687	Canola	plastid	53.44	53.03
PGSC0003DMT400045756	Potato	cytosol	54.58	52.96
Solyc02g081580.2.1	Tomato	cytosol	54.58	52.96
GSMUA_Achr7P05990_001	Banana	cytosol	50.76	52.36
CDX78683	Canola	cytosol	59.92	52.16
KRH30737	Soybean	cytosol	49.24	51.39
CDX81002	Canola	cytosol	50.0	50.38
CDY55757	Canola	cytosol	49.24	49.62
VIT_00s0270g00030.t01	Wine grape	cytosol	51.53	48.39
CDY51720	Canola	cytosol	45.04	47.77
KXG36301	Sorghum	cytosol	51.15	47.69
CDY07154	Canola	cytosol	43.89	46.18
Os05t0310600-01	Rice	cytosol	48.85	45.55
HORVU5Hr1G043560.3	Barley	mitochondrion	50.76	44.48
Zm00001d021614_P001	Maize	mitochondrion	51.91	44.3
CDY37998	Canola	cytosol	43.89	42.75
TraesCS5D01G142500.1	Wheat	mitochondrion	50.76	42.49
TraesCS5A01G135900.1	Wheat	mitochondrion	51.15	38.62
KRG98047	Soybean	cytosol, golgi, peroxisome	10.69	25.23

Protein Annotations

EnsemblPlants:CDY38122	EnsemblPlantsGene:GSBRNA2T00065402001	Gene3D:3.90.1720.10	InterPro:LRAT-like_dom	InterPro:Papain_like_cys_pep_sf	KEGG:00261+3.4.-.-
KEGG:00310+3.4.-.-	KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	PANTHER:PTHR13943	PANTHER:PTHR13943:SF41	PFAM:PF04970
ProteinID:CDY38122	ProteinID:CDY38122.1	SEG:seg	SUPFAM:SSF54001	UniParc:UPI0004EE102D	UniProt:A0A078HJT5
MapMan:35.2	:	:	:	:	:

Description

BnaC02g06510DBnaC02g06510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJT5]

Coordinates

chrLK032416:+:223306..224321

Molecular Weight (calculated)

27952.2 Da

IEP (calculated)

6.385

GRAVY (calculated)

-0.025

Length

262 amino acids

Sequence
(BLAST)

001: MGLLSNKISR DELKAGDHIY SWRSYIYTHH GIYVGDGKVI HFTRGGGLEI GTGTILDKII VSSVPNHGGD NPCPDCGDQT DHNGVITSCL DCFLSGGNLY
101: LFEYNVSKAI FLAKQRGGTC TIAASDPPED VVDRAKFLLL RNGFGEYHLL DNNCEDFAIY CKTGLLVLSV TKSGSSSQVN SVSLTVSAST SALSTTLGAV
201: ATGVGAVALT GYGNYCISRL AYDVGVRKDV RKVPVEELVA LMAVIQGKSE SDNNNKIESK LN

Best Arabidopsis Sequence Match ( AT5G16360.1 )
(BLAST)

001: MGLFSHKISR DDLKPGDHIY SWRNAYIYSH HGVYVGDEKV IHFTRGGGLE FGTGTVLDKI IDISIPNHGR RDKKCIDCGD QSNLGGVISS CLDCFLAGGN
101: LHLFEYSASP SIFLAKRGGT CTIASSDPCD EVISRAKFLL LQNGFGEYDL LDNNCEDFAI YCKTGLFVLS VATKFGCSGQ ANSVSAAGGV VALTLKVLGV
201: KKKSSSGHED DSVVSVVNQF ISSTVKYVVP GIGGLALAEY GNYCIGRLFY DIGVRKDACK VSVEELVAFV GAKQNILEGK KSN

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FFE7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.