Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY67201 | Canola | cytosol | 57.02 | 56.79 |
| CDX85508 | Canola | cytosol | 48.76 | 56.46 |
| AT3G02700.1 | Thale cress | cytosol | 58.68 | 56.35 |
| VIT_04s0069g01180.t01 | Wine grape | cytosol | 54.96 | 54.51 |
| CDY55574 | Canola | cytosol | 56.61 | 54.15 |
| CDX69451 | Canola | cytosol | 57.44 | 53.88 |
| CDY38122 | Canola | cytosol | 58.26 | 53.82 |
| AT5G16360.1 | Thale cress | cytosol | 62.81 | 53.71 |
| KRG98048 | Soybean | cytosol | 52.48 | 52.26 |
| CDX70687 | Canola | plastid | 56.61 | 51.89 |
| KRG98046 | Soybean | cytosol | 30.99 | 50.0 |
| Bra023560.1-P | Field mustard | cytosol | 59.5 | 49.66 |
| GSMUA_Achr7P05990_001 | Banana | cytosol | 52.07 | 49.61 |
| CDX78683 | Canola | cytosol | 61.16 | 49.17 |
| Solyc02g081580.2.1 | Tomato | cytosol | 53.72 | 48.15 |
| PGSC0003DMT400045756 | Potato | cytosol | 53.31 | 47.78 |
| KRH30736 | Soybean | cytosol, peroxisome, plastid | 38.84 | 47.0 |
| Bra008623.1-P | Field mustard | cytosol | 56.2 | 46.74 |
| KXG36301 | Sorghum | cytosol | 51.65 | 44.48 |
| KRH30737 | Soybean | cytosol | 45.87 | 44.22 |
| AT5G06370.1 | Thale cress | cytosol | 47.11 | 44.02 |
| Os05t0310600-01 | Rice | cytosol | 50.41 | 43.42 |
| VIT_00s0270g00030.t01 | Wine grape | cytosol | 48.35 | 41.94 |
| HORVU5Hr1G043560.3 | Barley | mitochondrion | 51.65 | 41.81 |
| Zm00001d021614_P001 | Maize | mitochondrion | 51.65 | 40.72 |
| AT1G01225.1 | Thale cress | cytosol | 42.98 | 40.0 |
| TraesCS5D01G142500.1 | Wheat | mitochondrion | 51.24 | 39.62 |
| AT4G00905.1 | Thale cress | cytosol | 41.32 | 38.02 |
| TraesCS5A01G135900.1 | Wheat | mitochondrion | 50.41 | 35.16 |
| KRG98047 | Soybean | cytosol, golgi, peroxisome | 10.74 | 23.42 |
Protein Annotations
| Gene3D:3.90.1720.10 | MapMan:35.2 | EntrezGene:831494 | UniProt:A0A178UHE4 | ProteinID:AED92280.1 | ArrayExpress:AT5G16330 |
| EnsemblPlantsGene:AT5G16330 | RefSeq:AT5G16330 | TAIR:AT5G16330 | RefSeq:AT5G16330-TAIR-G | EnsemblPlants:AT5G16330.1 | TAIR:AT5G16330.1 |
| Unigene:At.54864 | ProteinID:BAB09600.1 | InterPro:LRAT-like_dom | RefSeq:NP_197137.1 | ProteinID:OAO93198.1 | PFAM:PF04970 |
| PANTHER:PTHR13943 | PANTHER:PTHR13943:SF41 | UniProt:Q9FFF0 | UniParc:UPI00000A4B26 | SEG:seg | : |
Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9FFF0]
Coordinates
chr5:-:5346163..5346977
Molecular Weight (calculated)
26498.6 Da
IEP (calculated)
7.414
GRAVY (calculated)
-0.114
Length
242 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSHFLEKIG FISNQISRDK LKPGDHIYSW RNAYIYSHHG IYIGDEKVIH FTCGGGLETG TGTFLDKIVV SVIPNHKGDN PCSNCEEQLN LEGVISSCLD
101: CFLAGGNIYL FEYSVSPAAF IAKPRRGTCT IAPSDPCDEV ISRAKYLLLR NGFGDYHALE NNCEDFAIYC KTSLLVGKDY VLGRGGQASS VSAAAWLAQL
201: SPFGSKAIQL FADIGMRKDA IKVPVESLVP RAYATGTSRN RR
101: CFLAGGNIYL FEYSVSPAAF IAKPRRGTCT IAPSDPCDEV ISRAKYLLLR NGFGDYHALE NNCEDFAIYC KTSLLVGKDY VLGRGGQASS VSAAAWLAQL
201: SPFGSKAIQL FADIGMRKDA IKVPVESLVP RAYATGTSRN RR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.