Factsheet for VIT_00s0270g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0069g01180.t01	Wine grape	cytosol	62.72	71.72
KRH17250	Soybean	cytosol	59.14	64.96
GSMUA_Achr7P05990_001	Banana	cytosol	55.2	60.63
Solyc02g081580.2.1	Tomato	cytosol	58.42	60.37
AT3G02700.1	Thale cress	cytosol	54.48	60.32
PGSC0003DMT400045756	Potato	cytosol	56.27	58.15
Bra021419.1-P	Field mustard	cytosol	55.56	58.05
CDY53737	Canola	cytosol	55.56	54.96
KXG36301	Sorghum	cytosol	55.2	54.8
CDY67201	Canola	cytosol	46.95	53.91
Os05t0310600-01	Rice	cytosol	53.76	53.38
CDY38121	Canola	cytosol	43.01	52.63
CDY55574	Canola	cytosol	47.67	52.57
CDX69451	Canola	cytosol	48.39	52.33
CDX78682	Canola	cytosol	44.44	52.1
CDY38122	Canola	cytosol	48.39	51.53
CDX70686	Canola	cytosol	44.09	51.25
CDX85508	Canola	cytosol	37.99	50.72
Zm00001d021614_P001	Maize	mitochondrion	54.84	49.84
HORVU5Hr1G043560.3	Barley	mitochondrion	53.41	49.83
Bra008622.1-P	Field mustard	cytosol	44.09	49.6
CDY55575	Canola	cytosol	44.8	49.21
AT5G16330.1	Thale cress	cytosol	41.94	48.35
VIT_08s0105g00270.t01	Wine grape	cytosol	45.16	48.09
TraesCS5D01G142500.1	Wheat	mitochondrion	53.76	47.92
Bra023561.1-P	Field mustard	cytosol	44.8	47.89
Bra008623.1-P	Field mustard	cytosol	49.46	47.42
CDY72287	Canola	cytosol	43.73	46.74
AT5G16360.1	Thale cress	cytosol	45.88	45.23
Bra023560.1-P	Field mustard	cytosol	46.95	45.17
VIT_04s0023g02850.t01	Wine grape	mitochondrion, peroxisome, vacuole	24.01	44.37
TraesCS5A01G135900.1	Wheat	mitochondrion	54.12	43.52
CDX70687	Canola	plastid	40.86	43.18
VIT_15s0046g00120.t01	Wine grape	cytosol	40.5	43.13
CDX78683	Canola	cytosol	44.09	40.86

Protein Annotations

ArrayExpress:VIT_00s0270g00030	EMBL:AM484498	EMBL:FN595994	EnsemblPlants:VIT_00s0270g00030.t01	EnsemblPlantsGene:VIT_00s0270g00030	Gene3D:3.90.1720.10
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:LRAT-like_dom	PANTHER:PTHR13943	PANTHER:PTHR13943:SF32
PFAM:PF04970	ProteinID:CAN83999	ProteinID:CAN83999.1	ProteinID:CCB55919	ProteinID:CCB55919.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI000210A73C	UniProt:F6HML4	MapMan:35.2	:	:

Description

No Description!

Coordinates

chrUn:-:19910740..19914480

Molecular Weight (calculated)

30278.3 Da

IEP (calculated)

8.163

GRAVY (calculated)

0.204

Length

279 amino acids

Sequence
(BLAST)

001: MGVLSDKISR EQLKPGDHIY SWRTAHIYAH HGIYTGEGMV IHFTRASGQE IGTGTELDRA FFVSVPSHSS DTPCPRCGYH LRLRGGVIST CLDCFLADGD
101: LYLFRYDVSL AFFIAKFRGG TCTLAASDPP ADVIHRASFL LQHGFGVYQI FKNNCEDFAV YCKTGLLVFT NTSVGLSGQA VALFAIASAI ISSPLRFLTT
201: GFTGLAVIGW AMFSVSRLVS DVAVRRDVIK VSVERLVTYS GLDEQGLTVS SESINRCARR SLRSYSVAHG HPCSAAVGS

Best Arabidopsis Sequence Match ( AT3G02700.1 )
(BLAST)

001: MGFLSNKISR DDVKPGDHIY SWRQAYIYAH HGIYVGNGQV NHFTRGDGQE TGTGTFLDNI IVSSSHNHGD NPCPDCGDRS NLGGVISSCL ECFLAGGDLY
101: VFEYSVSPAI FLAKPRGGVC TIASSDPPEE VIYRANFLLQ NGFGVYNVFK NNCEDFAIYC KTGLLVANTD VGRSGQAASI VAAASVLLSS PLRFVAGFGG
201: LAVAGYGMYC TSRLVSDIGM RWDVSKVPVE RLVADVACMS DMEAKPEDEK TT

Arabidopsis Description

At3g02700 [Source:UniProtKB/TrEMBL;Acc:Q9M872]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.