Factsheet for Bra023561.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72287	Canola	cytosol	98.08	98.08
VIT_04s0069g01180.t01	Wine grape	cytosol	50.19	53.69
KRG98048	Soybean	cytosol	48.28	51.85
Bra021419.1-P	Field mustard	cytosol	52.11	50.94
Bra008622.1-P	Field mustard	cytosol	47.89	50.4
Solyc02g081580.2.1	Tomato	cytosol	50.57	48.89
Bra023560.1-P	Field mustard	cytosol	54.02	48.62
PGSC0003DMT400045756	Potato	cytosol	50.19	48.52
GSMUA_Achr7P05990_001	Banana	cytosol	46.74	48.03
KRG98046	Soybean	cytosol	27.59	48.0
Bra008623.1-P	Field mustard	cytosol	53.26	47.77
KRH30736	Soybean	cytosol, peroxisome, plastid	35.63	46.5
KXG36301	Sorghum	cytosol	49.04	45.55
KRH30737	Soybean	cytosol	43.3	45.02
VIT_00s0270g00030.t01	Wine grape	cytosol	47.89	44.8
Bra005893.1-P	Field mustard	cytosol	44.44	44.62
Os05t0310600-01	Rice	cytosol	46.74	43.42
HORVU5Hr1G043560.3	Barley	mitochondrion	47.89	41.81
Zm00001d021614_P001	Maize	mitochondrion	49.04	41.69
Bra037403.1-P	Field mustard	cytosol	39.46	41.37
Bra032627.1-P	Field mustard	cytosol	39.85	39.85
TraesCS5D01G142500.1	Wheat	mitochondrion	47.51	39.62
TraesCS5A01G135900.1	Wheat	mitochondrion	47.13	35.45
KRG98047	Soybean	cytosol, golgi, peroxisome	10.73	25.23

Protein Annotations

EnsemblPlants:Bra023561.1	EnsemblPlants:Bra023561.1-P	EnsemblPlantsGene:Bra023561	Gene3D:3.90.1720.10	InterPro:LRAT-like_dom	InterPro:Papain_like_cys_pep_sf
PANTHER:PTHR13943	PANTHER:PTHR13943:SF41	PFAM:PF04970	SUPFAM:SSF54001	UniParc:UPI0002543040	UniProt:M4E458
MapMan:35.2	:	:	:	:	:

Description

AT5G16330 (E=4e-087) | NC domain-containing protein

Coordinates

chrA02:-:3937962..3938834

Molecular Weight (calculated)

29255.7 Da

IEP (calculated)

10.440

GRAVY (calculated)

-0.182

Length

261 amino acids

Sequence
(BLAST)

001: MGLFSNNKIS RDDLKPGDHI YAWRKAYIYS HHGIYIGDGK VIHFTRGDGP VMRKGTFVDK IIVSSMTNHG GYNPCPNCGK RSNTRGVISS CLDCFLAGGN
101: LHLFKYNVSL ATFMSQLRGG TCTIAPSDPS NEVISRAKFL LLRNGFGDYH LFKNNCEDFA IYCKTGLVVG KSYVLGRNGQ ANTVGLAACV ARMLTPLVRN
201: VIRLFSDVGM RKDAIKVPVE SLVAWRNKDD TTVTRKRRLQ HKNKHSVLTF YKHIVKFRFV I

Best Arabidopsis Sequence Match ( AT5G16330.1 )
(BLAST)

001: MDSHFLEKIG FISNQISRDK LKPGDHIYSW RNAYIYSHHG IYIGDEKVIH FTCGGGLETG TGTFLDKIVV SVIPNHKGDN PCSNCEEQLN LEGVISSCLD
101: CFLAGGNIYL FEYSVSPAAF IAKPRRGTCT IAPSDPCDEV ISRAKYLLLR NGFGDYHALE NNCEDFAIYC KTSLLVGKDY VLGRGGQASS VSAAAWLAQL
201: SPFGSKAIQL FADIGMRKDA IKVPVESLVP RAYATGTSRN RR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FFF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.