CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra023561.1-P	Field mustard	cytosol	98.08	98.08
CDY38121	Canola	cytosol	72.8	83.33
CDX78682	Canola	cytosol	61.69	67.65
CDX70686	Canola	cytosol	62.07	67.5
CDX85508	Canola	cytosol	43.68	54.55
CDY67201	Canola	cytosol	50.57	54.32
CDY55574	Canola	cytosol	52.49	54.15
CDY38122	Canola	cytosol	53.64	53.44
VIT_04s0069g01180.t01	Wine grape	cytosol	49.81	53.28
CDX69451	Canola	cytosol	51.72	52.33
KRG98048	Soybean	cytosol	47.13	50.62
CDY55575	Canola	cytosol	47.51	48.82
CDX70687	Canola	plastid	48.66	48.11
Solyc02g081580.2.1	Tomato	cytosol	49.43	47.78
PGSC0003DMT400045756	Potato	cytosol	49.04	47.41
KRG98046	Soybean	cytosol	27.2	47.33
CDY53737	Canola	cytosol	50.96	47.16
GSMUA_Achr7P05990_001	Banana	cytosol	45.59	46.85
KRH30736	Soybean	cytosol, peroxisome, plastid	35.63	46.5
CDX78683	Canola	cytosol	52.11	45.18
KXG36301	Sorghum	cytosol	47.89	44.48
CDX81002	Canola	cytosol	43.68	43.85
KRH30737	Soybean	cytosol	42.15	43.82
VIT_00s0270g00030.t01	Wine grape	cytosol	46.74	43.73
CDY55757	Canola	cytosol	43.3	43.46
Os05t0310600-01	Rice	cytosol	45.59	42.35
CDY51720	Canola	cytosol	39.85	42.11
HORVU5Hr1G043560.3	Barley	mitochondrion	47.13	41.14
Zm00001d021614_P001	Maize	mitochondrion	47.89	40.72
CDY07154	Canola	cytosol	38.7	40.56
TraesCS5D01G142500.1	Wheat	mitochondrion	46.74	38.98
CDY37998	Canola	cytosol	39.85	38.66
TraesCS5A01G135900.1	Wheat	mitochondrion	46.74	35.16
KRG98047	Soybean	cytosol, golgi, peroxisome	11.11	26.13

Protein Annotations

EnsemblPlants:CDY72287	EnsemblPlantsGene:GSBRNA2T00026233001	Gene3D:3.90.1720.10	InterPro:LRAT-like_dom	InterPro:Papain_like_cys_pep_sf	KEGG:00261+3.4.-.-
KEGG:00310+3.4.-.-	KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	PANTHER:PTHR13943	PANTHER:PTHR13943:SF41	PFAM:PF04970
ProteinID:CDY72287	ProteinID:CDY72287.1	SUPFAM:SSF54001	UniParc:UPI0004EE31F2	UniProt:A0A078K321	MapMan:35.2

Description

BnaAnng40520DBnaAnng40520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K321]

Coordinates

chrLK049918:-:1247..2119

Molecular Weight (calculated)

29404.8 Da

IEP (calculated)

10.374

GRAVY (calculated)

-0.172

Length

261 amino acids

Sequence
(BLAST)

001: MGLFSSNKIS RDDLKPGDHI YAWRKAYIYS HHGIYIGDGK VIHFTRGDGP VMRKGTFVDK IIVSSMTNHG GYNPCPNCGK RSNTRGVISS CLDCFLAEGN
101: LHLFKYNVSL ATFMSQLRGG TCTIAPSDPS NEVISRAKFL LLRNGFGDYH LFKNNCEDFA IYCKTSLVVG KSYVLGRNGQ ANTVGLAACV ARMLTPLVRN
201: VIRLFFDVGM RKDAIKVPVE SLVAWRNKDD TTVTRKRRLQ HKNKHSVLTF YKHIVKFRFL I

Best Arabidopsis Sequence Match ( AT5G16330.1 )
(BLAST)

001: MDSHFLEKIG FISNQISRDK LKPGDHIYSW RNAYIYSHHG IYIGDEKVIH FTCGGGLETG TGTFLDKIVV SVIPNHKGDN PCSNCEEQLN LEGVISSCLD
101: CFLAGGNIYL FEYSVSPAAF IAKPRRGTCT IAPSDPCDEV ISRAKYLLLR NGFGDYHALE NNCEDFAIYC KTSLLVGKDY VLGRGGQASS VSAAAWLAQL
201: SPFGSKAIQL FADIGMRKDA IKVPVESLVP RAYATGTSRN RR

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FFF0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.