CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX84035
CDX96860
CDY49093
CDY62016

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06370.1	CDX84035	AT1G14340.1	21798944
AT5G06370.1	CDX96860	AT1G14340.1	21798944
AT5G06370.1	CDY49093	AT1G14340.1	21798944
AT5G06370.1	CDY62016	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005893.1-P	Field mustard	cytosol	99.62	99.62
CDX81002	Canola	cytosol	97.31	97.31
AT5G06370.1	Thale cress	cytosol	91.92	92.28
PGSC0003DMT400055040	Potato	cytosol	77.69	78.29
VIT_08s0105g00270.t01	Wine grape	cytosol	78.85	78.24
Solyc01g007110.2.1	Tomato	cytosol	76.54	77.13
KRH32851	Soybean	cytosol	72.69	72.97
KRH72187	Soybean	cytosol	72.31	72.59
EES19605	Sorghum	cytosol	68.46	64.73
TraesCS1A01G275200.1	Wheat	cytosol	66.92	63.04
TraesCS1D01G274800.1	Wheat	cytosol	66.54	62.68
TraesCS1B01G284400.1	Wheat	cytosol	66.54	62.68
HORVU1Hr1G074130.1	Barley	cytosol	66.15	62.55
VIT_04s0023g02850.t01	Wine grape	mitochondrion, peroxisome, vacuole	32.69	56.29
CDY67201	Canola	cytosol	48.08	51.44
CDX78682	Canola	cytosol	46.92	51.26
CDX70686	Canola	cytosol	46.54	50.42
CDY55574	Canola	cytosol	48.85	50.2
CDY53737	Canola	cytosol	53.85	49.65
CDY51720	Canola	cytosol	46.92	49.39
CDX85508	Canola	cytosol	39.62	49.28
CDY38122	Canola	cytosol	49.62	49.24
CDX69451	Canola	cytosol	48.85	49.22
CDY07154	Canola	cytosol	45.77	47.79
CDY55575	Canola	cytosol	46.15	47.24
CDY38121	Canola	cytosol	41.15	46.93
CDY37998	Canola	cytosol	48.08	46.47
CDY72287	Canola	cytosol	43.46	43.3
CDX70687	Canola	plastid	43.85	43.18
CDX78683	Canola	cytosol	48.85	42.19

Protein Annotations

EnsemblPlants:CDY55757	EnsemblPlantsGene:GSBRNA2T00017319001	Gene3D:3.90.1720.10	InterPro:LRAT-like_dom	KEGG:00261+3.4.-.-	KEGG:00310+3.4.-.-
KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	PANTHER:PTHR13943	PANTHER:PTHR13943:SF44	PFAM:PF04970	ProteinID:CDY55757
ProteinID:CDY55757.1	SEG:seg	UniParc:UPI0004EE8A7C	UniProt:A0A078IVX7	MapMan:35.2	:

Description

BnaA03g55340DBnaA03g55340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IVX7]

Coordinates

chrLK033427:-:3831..5192

Molecular Weight (calculated)

27992.7 Da

IEP (calculated)

8.158

GRAVY (calculated)

0.108

Length

260 amino acids

Sequence
(BLAST)

001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV VHFTRRGQEV GTGTVLDLIL VSSGPSRAHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LAKARGGTCT LAVSDPNEIT VHRANHLLRN GFGCYDVFKN NCEDFAIYCK TGLLVLEGRR TMGQSGQAVS IIGGPIAAVL STPMRLVTTN
201: IYGMAATAVS VYCASRYATD IGMRADVAKV EVEDLTRRLS VGLFQVVEPP VAAVALPNTS

Best Arabidopsis Sequence Match ( AT5G06370.1 )
(BLAST)

001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV IHFTRRGQEV GTGTVLDLIL VSSGPSRNHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS

Arabidopsis Description

AT5g06370/MHF15_11 [Source:UniProtKB/TrEMBL;Acc:Q93V51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.