Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- cytosol 3
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06370.1 | EES12950 | AT1G14340.1 | 21798944 |
| AT5G06370.1 | EES14264 | AT3G55290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G284400.1 | Wheat | cytosol | 78.91 | 78.62 |
| TraesCS1A01G275200.1 | Wheat | cytosol | 78.91 | 78.62 |
| HORVU1Hr1G074130.1 | Barley | cytosol | 78.55 | 78.55 |
| TraesCS1D01G274800.1 | Wheat | cytosol | 78.55 | 78.26 |
| PGSC0003DMT400055040 | Potato | cytosol | 66.18 | 70.54 |
| Solyc01g007110.2.1 | Tomato | cytosol | 65.82 | 70.16 |
| VIT_08s0105g00270.t01 | Wine grape | cytosol | 66.18 | 69.47 |
| Bra005893.1-P | Field mustard | cytosol | 65.09 | 68.85 |
| CDY55757 | Canola | cytosol | 64.73 | 68.46 |
| CDX81002 | Canola | cytosol | 64.0 | 67.69 |
| KRH72187 | Soybean | cytosol | 63.64 | 67.57 |
| KRH32851 | Soybean | cytosol | 63.27 | 67.18 |
| AT5G06370.1 | Thale cress | cytosol | 62.91 | 66.8 |
| KXG36301 | Sorghum | cytosol | 51.64 | 50.53 |
| VIT_04s0023g02850.t01 | Wine grape | mitochondrion, peroxisome, vacuole | 27.64 | 50.33 |
| EER99225 | Sorghum | cytosol | 46.18 | 47.39 |
| EES14126 | Sorghum | nucleus | 49.82 | 45.67 |
| EES15505 | Sorghum | cytosol | 12.73 | 18.92 |
Protein Annotations
| EnsemblPlants:EES19605 | EnsemblPlantsGene:SORBI_3009G153600 | EntrezGene:8058526 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0071284 |
| InterPro:LRAT-like_dom | PANTHER:PTHR13943 | PANTHER:PTHR13943:SF44 | PFAM:PF04970 | ProteinID:EES19605 | ProteinID:EES19605.1 |
| RefSeq:XP_002441175.1 | SEG:seg | UniParc:UPI0001A894F0 | UniProt:C5YYR6 | MapMan:35.2 | : |
Description
hypothetical protein
Coordinates
chr9:-:50984089..50987118
Molecular Weight (calculated)
29096.9 Da
IEP (calculated)
7.878
GRAVY (calculated)
0.161
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLLSNRIGK ESLKAGDHIY SWRAAWVYAH HGIYMGDDKV IHFTRGSGQE VGTGTVVDIL LVSSAPKRSN TPCPVCTNET SDTSTETNGV VSSCLSCFLA
101: GGALYRFEYA VNPALFLAKA RGGTCTLACS DPDDTVIRRA KYLLNNGFRC YNLFKSNCED FAIYCKTGLL VAERGVVGQS GQAISIIGGP LAAVVSTPFR
201: LVTTNIYGMA VMAVGVYCAS RYAADIGNRR DVVKVEVEDL TAGLASGRIR AVENIAQLMA PAAESPATAT ATLAA
101: GGALYRFEYA VNPALFLAKA RGGTCTLACS DPDDTVIRRA KYLLNNGFRC YNLFKSNCED FAIYCKTGLL VAERGVVGQS GQAISIIGGP LAAVVSTPFR
201: LVTTNIYGMA VMAVGVYCAS RYAADIGNRR DVVKVEVEDL TAGLASGRIR AVENIAQLMA PAAESPATAT ATLAA
001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV IHFTRRGQEV GTGTVLDLIL VSSGPSRNHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS
Arabidopsis Description
AT5g06370/MHF15_11 [Source:UniProtKB/TrEMBL;Acc:Q93V51]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.