CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021248_P002	Maize	cytosol	94.03	94.03
Os09t0526800-01	Rice	cytosol	86.57	86.57
TraesCS5D01G321200.1	Wheat	cytosol	85.07	85.07
TraesCS5A01G314900.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	84.7	84.7
TraesCS5B01G315900.1	Wheat	cytosol	83.58	83.58
GSMUA_Achr9P00880_001	Banana	cytosol	70.9	70.37
Solyc01g096150.2.1	Tomato	cytosol	62.31	65.75
VIT_15s0046g00120.t01	Wine grape	cytosol	63.81	65.27
PGSC0003DMT400000664	Potato	cytosol	61.57	64.96
Solyc05g050520.2.1	Tomato	cytosol	61.19	64.31
KRG97211	Soybean	cytosol	61.19	63.32
KRH68934	Soybean	cytosol	60.82	63.18
Bra032627.1-P	Field mustard	cytosol	61.19	62.84
AT1G01225.1	Thale cress	cytosol	60.07	61.92
CDY51720	Canola	cytosol	56.72	61.54
CDY37998	Canola	cytosol	60.82	60.59
CDY07154	Canola	cytosol	55.97	60.24
Bra037403.1-P	Field mustard	cytosol	55.97	60.24
EES14126	Sorghum	nucleus	67.16	60.0
AT4G00905.1	Thale cress	cytosol	57.09	58.17
HORVU5Hr1G080870.3	Barley	plastid	72.76	58.04
PGSC0003DMT400012897	Potato	mitochondrion, nucleus	57.84	55.36
Solyc12g055850.1.1	Tomato	cytosol	56.72	53.15
EES19605	Sorghum	cytosol	47.39	46.18
KXG36301	Sorghum	cytosol	46.64	44.48
EES15505	Sorghum	cytosol	14.18	20.54

Protein Annotations

EnsemblPlants:EER99225	EnsemblPlantsGene:SORBI_3002G271300	EntrezGene:8054882	InterPro:LRAT-like_dom	PANTHER:PTHR13943	PANTHER:PTHR13943:SF32
PFAM:PF04970	ProteinID:EER99225	ProteinID:EER99225.1	RefSeq:XP_002462704.1	SEG:seg	UniParc:UPI0001A83D02
UniProt:C5X643	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:65483435..65485915

Molecular Weight (calculated)

29187.0 Da

IEP (calculated)

6.846

GRAVY (calculated)

-0.141

Length

268 amino acids

Sequence
(BLAST)

001: MGLLSNRVER SEIRPGDHIY TWRAVYAYSH HGIYVGGSKV VHFTRKKETE SSDSSDSASS LISEIPSECQ TFPDCGFQLP NSGVVLTCLD CFLRNGSLYC
101: FEYGVPSAVF LAKLRGGTCT IAESDPPEVV VHRAMYLLQN GFGNYDMFEK NCEDFALYCK TGLLPVEEPG IGTSGQASSA IGVPLAALLS TPFKLLAAGP
201: LGMATVTAGM YCAGRYITDI GVRKDVAKVE VEKLSSHPGF HLIEDEGSVN KPSEKPKTLL PMKRKRER

Best Arabidopsis Sequence Match ( AT1G01225.1 )
(BLAST)

001: MGLLTNKIER EELKPGDHIY TYRAIFAYSH HGIFVGGSKV VHFRPEHNPM DSSTSSISSS SSEDICSIFP DCGFRQPDSG VVLSCLDCFL KNGSLYCFEY
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR

Arabidopsis Description

At1g01225 [Source:UniProtKB/TrEMBL;Acc:Q29PY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.