Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plasma membrane 1
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400012897 | Potato | mitochondrion, nucleus | 81.47 | 83.21 |
| Solyc01g096150.2.1 | Tomato | cytosol | 57.34 | 64.57 |
| Solyc05g050520.2.1 | Tomato | cytosol | 56.64 | 63.53 |
| GSMUA_Achr9P00880_001 | Banana | cytosol | 54.9 | 58.15 |
| Os09t0526800-01 | Rice | cytosol | 54.2 | 57.84 |
| Zm00001d021248_P002 | Maize | cytosol | 53.85 | 57.46 |
| EER99225 | Sorghum | cytosol | 53.15 | 56.72 |
| TraesCS5B01G315900.1 | Wheat | cytosol | 52.8 | 56.34 |
| TraesCS5D01G321200.1 | Wheat | cytosol | 52.8 | 56.34 |
| TraesCS5A01G314900.1 | Wheat | cytosol, mitochondrion, nucleus, peroxisome | 52.45 | 55.97 |
| Zm00001d006180_P001 | Maize | cytosol | 51.75 | 55.22 |
| TraesCS7A01G270500.1 | Wheat | mitochondrion, nucleus, peroxisome, plastid | 53.15 | 53.9 |
| TraesCS7B01G168500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 53.15 | 53.9 |
| TraesCS7D01G270700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 53.15 | 53.9 |
| HORVU7Hr1G056880.1 | Barley | cytosol | 52.45 | 53.38 |
| Solyc01g007110.2.1 | Tomato | cytosol | 47.2 | 52.33 |
| Os08t0546900-01 | Rice | cytosol, plasma membrane | 46.15 | 50.38 |
| Zm00001d052741_P001 | Maize | cytosol | 48.95 | 49.3 |
| EES14126 | Sorghum | nucleus | 50.7 | 48.33 |
| Solyc02g081580.2.1 | Tomato | cytosol | 45.1 | 47.78 |
| Zm00001d031737_P001 | Maize | cytosol | 46.5 | 45.86 |
| HORVU5Hr1G080870.3 | Barley | plastid | 47.2 | 40.18 |
Protein Annotations
| EnsemblPlants:Solyc12g055850.1.1 | EnsemblPlantsGene:Solyc12g055850.1 | InterPro:LRAT-like_dom | PANTHER:PTHR13943 | PANTHER:PTHR13943:SF32 | PFAM:PF04970 |
| SEG:seg | UniParc:UPI0002769D1C | UniProt:K4DFR6 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr12:+:61861121..61864583
Molecular Weight (calculated)
31075.9 Da
IEP (calculated)
7.911
GRAVY (calculated)
-0.130
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLLTHKIER SEIASGDHIY SWRTVFAYSH HGIYVGGSKV VHFTRDQSIV SGDQILFSAP LNCSSASSTN VSSTCTNIPD CGFQQKASGV VLSCLDCFLG
101: EEGLLYRFDY GTSPSVFLTK LRGGTCTTAQ SDPPEAVIHR AMYLLQNGFG NYDVFKNNCE DFALYCKTGL LVLDQGALGR SGQAASVIGA PLAAIASSPL
201: KLFMTSPAGL VVATVGMYCL TRYATDIGVR TDVTKVKVEE LTSFHNCKSS KKRKNENHSD TREVTLNQTE TPAKTRRKNV IEGVWD
101: EEGLLYRFDY GTSPSVFLTK LRGGTCTTAQ SDPPEAVIHR AMYLLQNGFG NYDVFKNNCE DFALYCKTGL LVLDQGALGR SGQAASVIGA PLAAIASSPL
201: KLFMTSPAGL VVATVGMYCL TRYATDIGVR TDVTKVKVEE LTSFHNCKSS KKRKNENHSD TREVTLNQTE TPAKTRRKNV IEGVWD
001: MGLLTNKIER EELKPGDHIY TYRAIFAYSH HGIFVGGSKV VHFRPEHNPM DSSTSSISSS SSEDICSIFP DCGFRQPDSG VVLSCLDCFL KNGSLYCFEY
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR
Arabidopsis Description
At1g01225 [Source:UniProtKB/TrEMBL;Acc:Q29PY0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.