Factsheet for Zm00001d006180_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021248_P002	Maize	cytosol	90.67	90.67
Os09t0526800-01	Rice	cytosol	84.7	84.7
TraesCS5A01G314900.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	84.33	84.33
TraesCS5D01G321200.1	Wheat	cytosol	83.96	83.96
TraesCS5B01G315900.1	Wheat	cytosol	82.46	82.46
GSMUA_Achr9P00880_001	Banana	cytosol	70.52	70.0
PGSC0003DMT400000664	Potato	cytosol	61.57	64.96
VIT_15s0046g00120.t01	Wine grape	cytosol	63.43	64.89
Solyc01g096150.2.1	Tomato	cytosol	60.82	64.17
Solyc05g050520.2.1	Tomato	cytosol	60.45	63.53
KRG97211	Soybean	cytosol	60.07	62.16
KRH68934	Soybean	cytosol	59.33	61.63
Bra032627.1-P	Field mustard	cytosol	59.7	61.3
CDY51720	Canola	cytosol	55.97	60.73
Zm00001d052741_P001	Maize	cytosol	64.18	60.56
AT1G01225.1	Thale cress	cytosol	58.58	60.38
CDY07154	Canola	cytosol	55.97	60.24
Bra037403.1-P	Field mustard	cytosol	55.22	59.44
CDY37998	Canola	cytosol	59.33	59.11
Zm00001d031737_P001	Maize	cytosol	62.31	57.59
HORVU5Hr1G080870.3	Barley	plastid	72.01	57.44
AT4G00905.1	Thale cress	cytosol	56.34	57.41
PGSC0003DMT400012897	Potato	mitochondrion, nucleus	57.09	54.64
Solyc12g055850.1.1	Tomato	cytosol	55.22	51.75
Zm00001d021614_P001	Maize	mitochondrion	45.52	39.74
Zm00001d046887_P001	Maize	cytosol	14.18	17.67

Protein Annotations

EnsemblPlants:Zm00001d006180_P001	EnsemblPlants:Zm00001d006180_T001	EnsemblPlantsGene:Zm00001d006180	EntrezGene:103647997	InterPro:LRAT-like_dom	PANTHER:PTHR13943
PANTHER:PTHR13943:SF32	PFAM:PF04970	ProteinID:ONM23002.1	SEG:seg	UniParc:UPI000221B757	UniProt:A0A1D6ETH9
MapMan:35.2	:	:	:	:	:

Description

NC domain-containing protein-related

Coordinates

chr2:-:200830545..200833132

Molecular Weight (calculated)

28960.8 Da

IEP (calculated)

7.903

GRAVY (calculated)

-0.096

Length

268 amino acids

Sequence
(BLAST)

001: MGLLSNRVER SEIRPGDHIY TWRAVYAYSH HGIYVGGSKV VHFTRKKETE SSDSSDFTSS LISGVPSECP TFPDCGFQLP SSGVVLTCLD CFVRSGSLYC
101: FEYGVPSAVF LAKLRGGTCT TAESDPPEVV VHRAMCLLQK GFGNYDIFEK NCEDFALYCK TGLLPVEDPG IGTSGQASSA IGVPLAALLS TPFKLLAAGP
201: LGMATVTAGM YCAGRYITDI GVRKDVAKVE VEKLSSHPGF HLVEDEGSVN KRSEKPKSLL PMKRKRGR

Best Arabidopsis Sequence Match ( AT1G01225.1 )
(BLAST)

001: MGLLTNKIER EELKPGDHIY TYRAIFAYSH HGIFVGGSKV VHFRPEHNPM DSSTSSISSS SSEDICSIFP DCGFRQPDSG VVLSCLDCFL KNGSLYCFEY
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR

Arabidopsis Description

At1g01225 [Source:UniProtKB/TrEMBL;Acc:Q29PY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.