Factsheet for Bra037403.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51720	Canola	cytosol	95.98	96.76
AT4G00905.1	Thale cress	cytosol	83.13	78.71
Bra032627.1-P	Field mustard	cytosol	75.1	71.65
PGSC0003DMT400000664	Potato	cytosol	71.89	70.47
Solyc01g096150.2.1	Tomato	cytosol	71.49	70.08
KRH68934	Soybean	cytosol	70.68	68.22
KRG97211	Soybean	cytosol	70.68	67.95
Solyc05g050520.2.1	Tomato	cytosol	68.27	66.67
VIT_15s0046g00120.t01	Wine grape	cytosol	69.48	66.03
GSMUA_Achr9P00880_001	Banana	cytosol	62.25	57.41
EER99225	Sorghum	cytosol	60.24	55.97
Os09t0526800-01	Rice	cytosol	60.24	55.97
Zm00001d021248_P002	Maize	cytosol	59.84	55.6
Zm00001d006180_P001	Maize	cytosol	59.44	55.22
TraesCS5A01G314900.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	59.44	55.22
TraesCS5B01G315900.1	Wheat	cytosol	59.04	54.85
TraesCS5D01G321200.1	Wheat	cytosol	59.04	54.85
HORVU7Hr1G056880.1	Barley	cytosol	59.04	52.31
TraesCS7B01G168500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	59.04	52.13
TraesCS7A01G270500.1	Wheat	mitochondrion, nucleus, peroxisome, plastid	58.63	51.77
TraesCS7D01G270700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	58.63	51.77
Os08t0546900-01	Rice	cytosol, plasma membrane	51.41	48.85
EES14126	Sorghum	nucleus	58.23	48.33
Zm00001d052741_P001	Maize	cytosol	55.02	48.24
Zm00001d031737_P001	Maize	cytosol	54.62	46.9
Bra005893.1-P	Field mustard	cytosol	48.19	46.15
Bra021419.1-P	Field mustard	cytosol	44.98	41.95
Bra008622.1-P	Field mustard	cytosol	40.56	40.73
Bra023561.1-P	Field mustard	cytosol	41.37	39.46
HORVU5Hr1G080870.3	Barley	plastid	52.21	38.69
Bra023560.1-P	Field mustard	cytosol	44.58	38.28
Bra008623.1-P	Field mustard	cytosol	44.18	37.8

Protein Annotations

EnsemblPlants:Bra037403.1	EnsemblPlants:Bra037403.1-P	EnsemblPlantsGene:Bra037403	InterPro:LRAT-like_dom	PANTHER:PTHR13943	PANTHER:PTHR13943:SF73
PFAM:PF04970	SEG:seg	UniParc:UPI00025420E3	UniProt:M4F8J1	MapMan:35.2	:

Description

AT4G00905 (E=5e-102) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: NC (InterPro:IPR007053); BEST Arabidopsis thaliana protein match is: NC domain-containing protein-related (TAIR:AT1G01225.1); Has 84 Blast hits to 83 proteins in 19 species: Archae - 0; Bacteria - 10; Metazoa - 6; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

Coordinates

chrA09:+:701734..702805

Molecular Weight (calculated)

26917.3 Da

IEP (calculated)

8.313

GRAVY (calculated)

-0.004

Length

249 amino acids

Sequence
(BLAST)

001: MNLITNKVDR DELKPGDHIY TYRAVFAYSH HGVFVGGCKL VHFKPEQSLK ASSSSSSSSS TASSEVNNDS SCPTYPDCGF KQPNSGVLLS CLDCFLKNGT
101: LYRFTYGVSS SMFLTRLRGG TCTTAPSDPF QTVVHRAMHL LQNGFGNYDV FQNNCEDFAL YCKTGLLILD KNGVGRSGQA SSILGAPLAA LLSSPLTLLI
201: PNPVGVAMVT AGMYCMSRYA TDIGVRTDVI KVPVEDLALN LGIKTLKKW

Best Arabidopsis Sequence Match ( AT4G00905.1 )
(BLAST)

001: MGVLTNKVER DELKPGDHIY TYRAVFAYSH HGVFVGGCKV VHFKPEHSLI SPTLASSSSS SSSSVSEVND SSEAPCPTYP DCGYKRPKSG VVLSCLDCFL
101: KKGSLYRFDY GVSSSIFLTR FRGGTCTTAP SDPLQTVIHR AMHLLQNGFG NYNVFQNNCE DFALYCKTGL LILDKNGVGR SGQASSIIGA PLAALLSSPL
201: TLLIPNPVGV ATVTAGMYCM SRYATDIGVR NDVIKVPVED LALNLGLKPL KRKRKACDTS ISR

Arabidopsis Description

NC domain-containing protein-like protein [Source:UniProtKB/TrEMBL;Acc:Q3EAE0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.