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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 5
  • plastid 1
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:cytosol, plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY55575 Canola cytosol 74.19 72.44
VIT_04s0069g01180.t01 Wine grape cytosol 55.24 56.15
KRG98048 Soybean cytosol 52.42 53.5
Bra021419.1-P Field mustard cytosol 55.24 51.31
KRG98046 Soybean cytosol 30.65 50.67
KRH30736 Soybean cytosol, peroxisome, plastid 39.52 49.0
GSMUA_Achr7P05990_001 Banana cytosol 49.6 48.43
Bra023561.1-P Field mustard cytosol 50.4 47.89
Solyc02g081580.2.1 Tomato cytosol 52.02 47.78
Bra023560.1-P Field mustard cytosol 55.65 47.59
PGSC0003DMT400045756 Potato cytosol 51.61 47.41
KRH30737 Soybean cytosol 47.18 46.61
Bra005893.1-P Field mustard cytosol 48.39 46.15
Bra008623.1-P Field mustard cytosol 53.23 45.36
KXG36301 Sorghum cytosol 50.4 44.48
Os05t0310600-01 Rice cytosol 50.4 44.48
VIT_00s0270g00030.t01 Wine grape cytosol 49.6 44.09
HORVU5Hr1G043560.3 Barley mitochondrion 51.21 42.47
Zm00001d021614_P001 Maize mitochondrion 50.81 41.04
TraesCS5D01G142500.1 Wheat mitochondrion 51.21 40.58
Bra037403.1-P Field mustard cytosol 40.73 40.56
Bra032627.1-P Field mustard cytosol 41.13 39.08
TraesCS5A01G135900.1 Wheat mitochondrion 50.4 36.02
KRG98047 Soybean cytosol, golgi, peroxisome 10.48 23.42
Protein Annotations
EnsemblPlants:Bra008622.1EnsemblPlants:Bra008622.1-PEnsemblPlantsGene:Bra008622Gene3D:3.90.1720.10InterPro:LRAT-like_domPANTHER:PTHR13943
PANTHER:PTHR13943:SF41PFAM:PF04970SEG:segUniParc:UPI0002544A54UniProt:M4CWM5MapMan:35.2
Description
AT3G02700 (E=4e-066) | NC domain-containing protein
Coordinates
chrA10:+:13125752..13126582
Molecular Weight (calculated)
27115.6 Da
IEP (calculated)
8.132
GRAVY (calculated)
0.083
Length
248 amino acids
Sequence
(BLAST)
001: MGLFSNKISR EEVKPGDHIY SWRTAYVYAH HGIYVGDDKV IHFTRGGGRQ TETGTFLDKL VVNSSPNYPQ CLVCKDNSSF KGDKVITSCL DCFLAGGNLY
101: LYKYDVSWVA FLAKPRGGTC TLAPSDPPKD VLFRANFHLL IDGWFGDYDV TDNNCEDFAI YCKTGLLVCN KARFGTSGQV NSAVSVNFAA LVLGFSGLPV
201: VGFGAYCYGR LAGDVSLLAS DVGMTARLRV DVIKVPVERL SAMLKKVI
Best Arabidopsis Sequence Match ( AT5G16360.1 )
(BLAST)
001: MGLFSHKISR DDLKPGDHIY SWRNAYIYSH HGVYVGDEKV IHFTRGGGLE FGTGTVLDKI IDISIPNHGR RDKKCIDCGD QSNLGGVISS CLDCFLAGGN
101: LHLFEYSASP SIFLAKRGGT CTIASSDPCD EVISRAKFLL LQNGFGEYDL LDNNCEDFAI YCKTGLFVLS VATKFGCSGQ ANSVSAAGGV VALTLKVLGV
201: KKKSSSGHED DSVVSVVNQF ISSTVKYVVP GIGGLALAEY GNYCIGRLFY DIGVRKDACK VSVEELVAFV GAKQNILEGK KSN
Arabidopsis Description
Gb [Source:UniProtKB/TrEMBL;Acc:Q9FFE7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.