Factsheet for PGSC0003DMT400045756

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g081580.2.1	Tomato	cytosol	94.44	94.44
VIT_04s0069g01180.t01	Wine grape	cytosol	64.81	71.72
KRH17250	Soybean	cytosol	66.3	70.47
GSMUA_Achr7P05990_001	Banana	cytosol	61.85	65.75
AT3G02700.1	Thale cress	cytosol	58.15	62.3
Bra021419.1-P	Field mustard	cytosol	57.04	57.68
VIT_00s0270g00030.t01	Wine grape	cytosol	58.15	56.27
KXG36301	Sorghum	cytosol	58.52	56.23
Os05t0310600-01	Rice	cytosol	58.15	55.87
CDY55574	Canola	cytosol	52.22	55.73
CDY67201	Canola	cytosol	49.26	54.73
CDX78682	Canola	cytosol	48.15	54.62
CDY53737	Canola	cytosol	57.04	54.61
CDY38122	Canola	cytosol	52.96	54.58
CDY38121	Canola	cytosol	45.93	54.39
CDX69451	Canola	cytosol	51.85	54.26
CDX85508	Canola	cytosol	41.85	54.07
CDX70686	Canola	cytosol	47.78	53.75
AT5G16330.1	Thale cress	cytosol	47.78	53.31
PGSC0003DMT400055040	Potato	cytosol	50.74	53.1
HORVU5Hr1G043560.3	Barley	mitochondrion	58.52	52.84
Zm00001d021614_P001	Maize	mitochondrion	58.89	51.79
Bra008622.1-P	Field mustard	cytosol	47.41	51.61
TraesCS5D01G142500.1	Wheat	mitochondrion	58.52	50.48
Bra023561.1-P	Field mustard	cytosol	48.52	50.19
CDY55575	Canola	cytosol	47.04	50.0
CDY72287	Canola	cytosol	47.41	49.04
Bra008623.1-P	Field mustard	cytosol	52.59	48.8
PGSC0003DMT400000664	Potato	cytosol	45.56	48.43
AT5G16360.1	Thale cress	cytosol	50.74	48.41
Bra023560.1-P	Field mustard	cytosol	51.48	47.93
TraesCS5A01G135900.1	Wheat	mitochondrion	57.41	44.67
CDX70687	Canola	plastid	43.33	44.32
CDX78683	Canola	cytosol	48.15	43.19
PGSC0003DMT400012897	Potato	mitochondrion, nucleus	44.44	42.86

Protein Annotations

EnsemblPlants:PGSC0003DMT400045756	EnsemblPlantsGene:PGSC0003DMG400017742	EntrezGene:107058039	Gene3D:3.90.1720.10	InterPro:LRAT-like_dom	PANTHER:PTHR13943
PANTHER:PTHR13943:SF32	PFAM:PF04970	PGSC:PGSC0003DMG400017742	RefSeq:XP_015158810.1	SEG:seg	TMHMM:TMhelix
UniParc:UPI000294D3DC	UniProt:M1BI61	MapMan:35.2	:	:	:

Description

NC domain-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400017742]

Coordinates

chr2:-:37378006..37380617

Molecular Weight (calculated)

29291.2 Da

IEP (calculated)

7.673

GRAVY (calculated)

0.069

Length

270 amino acids

Sequence
(BLAST)

001: MSGSSRWTMP EMAGILSNKI PQDELKPGDH IYSWRNAYLY AHHGIYVGDD MVIHFTRAAG QEIGTGTVLD RFIFSSSPSH PSGFPCPRCG DQSRTEGVIS
101: SCLECFLCGG ELYLFKYGVS PGVFITKTRG GTCTIAPSDP PEHVLHRAKF LLQNGFGVYN IFKNNCEDFA IYCKTGLLVF TNVSVGRSGQ ATSFLSATTA
201: IVFAPLRFLT TGVSGLAAVG FGVYCVSRYV SDIGVRRDVM KIPVERLILC PGPLESEAAT ITDTSKEKGL

Best Arabidopsis Sequence Match ( AT3G02700.1 )
(BLAST)

001: MGFLSNKISR DDVKPGDHIY SWRQAYIYAH HGIYVGNGQV NHFTRGDGQE TGTGTFLDNI IVSSSHNHGD NPCPDCGDRS NLGGVISSCL ECFLAGGDLY
101: VFEYSVSPAI FLAKPRGGVC TIASSDPPEE VIYRANFLLQ NGFGVYNVFK NNCEDFAIYC KTGLLVANTD VGRSGQAASI VAAASVLLSS PLRFVAGFGG
201: LAVAGYGMYC TSRLVSDIGM RWDVSKVPVE RLVADVACMS DMEAKPEDEK TT

Arabidopsis Description

At3g02700 [Source:UniProtKB/TrEMBL;Acc:Q9M872]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.