Factsheet for Bra008623.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 5
peroxisome 1
golgi 1
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69451	Canola	cytosol	75.26	84.88
CDY67201	Canola	cytosol	70.45	84.36
CDY55574	Canola	cytosol	68.73	79.05
Bra023560.1-P	Field mustard	cytosol	63.92	64.14
VIT_04s0069g01180.t01	Wine grape	cytosol	50.86	60.66
KRG98048	Soybean	cytosol	48.11	57.61
AT5G16330.1	Thale cress	cytosol	46.74	56.2
AT5G16360.1	Thale cress	cytosol	53.95	55.48
Bra021419.1-P	Field mustard	cytosol	50.52	55.06
KRG98046	Soybean	cytosol	27.84	54.0
GSMUA_Achr7P05990_001	Banana	cytosol	47.08	53.94
Solyc02g081580.2.1	Tomato	cytosol	49.83	53.7
Bra023561.1-P	Field mustard	cytosol	47.77	53.26
Bra008622.1-P	Field mustard	cytosol	45.36	53.23
PGSC0003DMT400045756	Potato	cytosol	48.8	52.59
Bra005893.1-P	Field mustard	cytosol	46.05	51.54
KRH30736	Soybean	cytosol, peroxisome, plastid	35.4	51.5
VIT_00s0270g00030.t01	Wine grape	cytosol	47.42	49.46
KXG36301	Sorghum	cytosol	47.42	49.11
KRH30737	Soybean	cytosol	42.27	49.0
Os05t0310600-01	Rice	cytosol	43.64	45.2
Zm00001d021614_P001	Maize	mitochondrion	47.42	44.95
HORVU5Hr1G043560.3	Barley	mitochondrion	45.7	44.48
Bra032627.1-P	Field mustard	cytosol	39.86	44.44
Bra037403.1-P	Field mustard	cytosol	37.8	44.18
TraesCS5D01G142500.1	Wheat	mitochondrion	45.7	42.49
TraesCS5A01G135900.1	Wheat	mitochondrion	46.39	38.9
KRG98047	Soybean	cytosol, golgi, peroxisome	9.28	24.32

Protein Annotations

EnsemblPlants:Bra008623.1	EnsemblPlants:Bra008623.1-P	EnsemblPlantsGene:Bra008623	Gene3D:3.90.1720.10	InterPro:LRAT-like_dom	InterPro:Papain_like_cys_pep_sf
ncoils:Coil	PANTHER:PTHR13943	PANTHER:PTHR13943:SF41	PFAM:PF04970	SEG:seg	SUPFAM:SSF54001
UniParc:UPI0002544A55	UniProt:M4CWM6	MapMan:35.2	:	:	:

Description

AT5G16360 (E=5e-085) | NC domain-containing protein

Coordinates

chrA10:+:13127543..13128534

Molecular Weight (calculated)

30976.9 Da

IEP (calculated)

7.412

GRAVY (calculated)

0.059

Length

291 amino acids

Sequence
(BLAST)

001: MGLFSNKISR DELKAGDHIY SWRSYIYSHH GIYVGDGKVI HFTRRGGLEI GTGTYLDKII QFSVPRHGGD NPCPNCGDQS ILDGVISSCL DCFLAGGSLY
101: LFQYDVSKAI LVAKQRGGTC TTATSDPPEE VVHRARYLLS GNGFGEYHLL DNNCEDFAIY CKTGLLVFSV TKSGSSSQVN SVCAAGGLAS LTLRFLGVGR
201: AAGQAASLAV SPAMVVSAAT RAVTTTFGLV TTGFAAMAVA EYSKYCIGRV AYDVGVRKDV RKVPVEELAA LLAVLEGSLD NLDNTNSDKN K

Best Arabidopsis Sequence Match ( AT5G16360.1 )
(BLAST)

001: MGLFSHKISR DDLKPGDHIY SWRNAYIYSH HGVYVGDEKV IHFTRGGGLE FGTGTVLDKI IDISIPNHGR RDKKCIDCGD QSNLGGVISS CLDCFLAGGN
101: LHLFEYSASP SIFLAKRGGT CTIASSDPCD EVISRAKFLL LQNGFGEYDL LDNNCEDFAI YCKTGLFVLS VATKFGCSGQ ANSVSAAGGV VALTLKVLGV
201: KKKSSSGHED DSVVSVVNQF ISSTVKYVVP GIGGLALAEY GNYCIGRLFY DIGVRKDACK VSVEELVAFV GAKQNILEGK KSN

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FFE7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.