Factsheet for Bra023560.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85508	Canola	cytosol	64.14	89.0
CDY38122	Canola	cytosol	77.24	85.5
Bra008623.1-P	Field mustard	cytosol	64.14	63.92
AT5G16360.1	Thale cress	cytosol	61.03	62.54
VIT_04s0069g01180.t01	Wine grape	cytosol	51.38	61.07
AT5G16330.1	Thale cress	cytosol	49.66	59.5
KRG98048	Soybean	cytosol	49.66	59.26
Bra021419.1-P	Field mustard	cytosol	53.79	58.43
Bra008622.1-P	Field mustard	cytosol	47.59	55.65
KRG98046	Soybean	cytosol	28.62	55.33
KRH30736	Soybean	cytosol, peroxisome, plastid	37.59	54.5
Bra023561.1-P	Field mustard	cytosol	48.62	54.02
GSMUA_Achr7P05990_001	Banana	cytosol	46.9	53.54
Solyc02g081580.2.1	Tomato	cytosol	49.31	52.96
KRH30737	Soybean	cytosol	45.17	52.19
PGSC0003DMT400045756	Potato	cytosol	47.93	51.48
Bra005893.1-P	Field mustard	cytosol	44.83	50.0
KXG36301	Sorghum	cytosol	47.59	49.11
Os05t0310600-01	Rice	cytosol	46.55	48.04
VIT_00s0270g00030.t01	Wine grape	cytosol	45.17	46.95
HORVU5Hr1G043560.3	Barley	mitochondrion	47.59	46.15
Zm00001d021614_P001	Maize	mitochondrion	47.93	45.28
Bra037403.1-P	Field mustard	cytosol	38.28	44.58
TraesCS5D01G142500.1	Wheat	mitochondrion	47.24	43.77
Bra032627.1-P	Field mustard	cytosol	39.31	43.68
TraesCS5A01G135900.1	Wheat	mitochondrion	47.93	40.06
KRG98047	Soybean	cytosol, golgi, peroxisome	9.66	25.23

Protein Annotations

EnsemblPlants:Bra023560.1	EnsemblPlants:Bra023560.1-P	EnsemblPlantsGene:Bra023560	Gene3D:3.90.1720.10	InterPro:LRAT-like_dom	InterPro:Papain_like_cys_pep_sf
PANTHER:PTHR13943	PANTHER:PTHR13943:SF41	PFAM:PF04970	SEG:seg	SUPFAM:SSF54001	UniParc:UPI000254303F
UniProt:M4E457	MapMan:35.2	:	:	:	:

Description

AT5G16360 (E=1e-088) | NC domain-containing protein

Coordinates

chrA02:-:3936508..3937480

Molecular Weight (calculated)

30417.3 Da

IEP (calculated)

7.110

GRAVY (calculated)

0.108

Length

290 amino acids

Sequence
(BLAST)

001: MGLLSNKISR DELKAGDHIY SWRSYIYTHH GIYVGDGKVI HFTRGGGLEI GTGTILDKII VSSVPHHGDN PCPDCGDQTN LNGVISSCLD CFLSGGNLYL
101: FEYNVSKAIF LAKQRGGTCT IAASDPPEDV VARAKFLLLR NGFGEYHLLD NNCEDFAIYC KTGLLVLSVT KSGSSSQVNS VCAAGGVVTL TLRALGVGTS
201: GSLATASSPA LTVSASTSAL STTLGAVATG VGAIALTGYG NYCIGRLAYD VGVRKDVRKV PVEELVALMA VIQGKSESDN NNNKIESKLN

Best Arabidopsis Sequence Match ( AT5G16360.1 )
(BLAST)

001: MGLFSHKISR DDLKPGDHIY SWRNAYIYSH HGVYVGDEKV IHFTRGGGLE FGTGTVLDKI IDISIPNHGR RDKKCIDCGD QSNLGGVISS CLDCFLAGGN
101: LHLFEYSASP SIFLAKRGGT CTIASSDPCD EVISRAKFLL LQNGFGEYDL LDNNCEDFAI YCKTGLFVLS VATKFGCSGQ ANSVSAAGGV VALTLKVLGV
201: KKKSSSGHED DSVVSVVNQF ISSTVKYVVP GIGGLALAEY GNYCIGRLFY DIGVRKDACK VSVEELVAFV GAKQNILEGK KSN

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FFE7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.