Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G043560.3 | Barley | mitochondrion | 77.96 | 81.61 |
| Os05t0310600-01 | Rice | cytosol | 65.18 | 72.6 |
| KXG36301 | Sorghum | cytosol | 63.9 | 71.17 |
| TraesCS5A01G135900.1 | Wheat | mitochondrion | 75.4 | 68.01 |
| Zm00001d021614_P001 | Maize | mitochondrion | 65.18 | 66.45 |
| VIT_04s0069g01180.t01 | Wine grape | cytosol | 50.8 | 65.16 |
| GSMUA_Achr7P05990_001 | Banana | cytosol | 52.72 | 64.96 |
| KRG98048 | Soybean | cytosol | 50.16 | 64.61 |
| KRH17250 | Soybean | cytosol | 52.4 | 64.57 |
| Solyc02g081580.2.1 | Tomato | cytosol | 51.44 | 59.63 |
| PGSC0003DMT400045756 | Potato | cytosol | 50.48 | 58.52 |
| AT3G02700.1 | Thale cress | cytosol | 45.05 | 55.95 |
| KRH30736 | Soybean | cytosol, peroxisome, plastid | 35.14 | 55.0 |
| KRH30737 | Soybean | cytosol | 44.09 | 54.98 |
| KRG98046 | Soybean | cytosol | 26.2 | 54.67 |
| Bra021419.1-P | Field mustard | cytosol | 46.33 | 54.31 |
| VIT_00s0270g00030.t01 | Wine grape | cytosol | 47.92 | 53.76 |
| CDY67201 | Canola | cytosol | 41.53 | 53.5 |
| CDY55574 | Canola | cytosol | 43.13 | 53.36 |
| CDX69451 | Canola | cytosol | 43.77 | 53.1 |
| CDX78682 | Canola | cytosol | 40.26 | 52.94 |
| CDX70686 | Canola | cytosol | 40.58 | 52.92 |
| CDX85508 | Canola | cytosol | 35.14 | 52.63 |
| CDY53737 | Canola | cytosol | 46.65 | 51.77 |
| AT5G16330.1 | Thale cress | cytosol | 39.62 | 51.24 |
| Bra008622.1-P | Field mustard | cytosol | 40.58 | 51.21 |
| CDY55575 | Canola | cytosol | 41.21 | 50.79 |
| CDY38122 | Canola | cytosol | 42.49 | 50.76 |
| CDY38121 | Canola | cytosol | 36.1 | 49.56 |
| TraesCS1D01G274800.1 | Wheat | cytosol | 42.49 | 48.19 |
| Bra023561.1-P | Field mustard | cytosol | 39.62 | 47.51 |
| Bra023560.1-P | Field mustard | cytosol | 43.77 | 47.24 |
| CDY72287 | Canola | cytosol | 38.98 | 46.74 |
| TraesCS7D01G270700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 41.53 | 46.1 |
| Bra008623.1-P | Field mustard | cytosol | 42.49 | 45.7 |
| AT5G16360.1 | Thale cress | cytosol | 41.21 | 45.58 |
| TraesCS5D01G321200.1 | Wheat | cytosol | 37.7 | 44.03 |
| CDX70687 | Canola | plastid | 36.1 | 42.8 |
| CDX78683 | Canola | cytosol | 40.89 | 42.52 |
| KRG98047 | Soybean | cytosol, golgi, peroxisome | 8.95 | 25.23 |
| TraesCS6D01G405400.1 | Wheat | cytosol | 9.27 | 15.43 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G142500.1 | EnsemblPlantsGene:TraesCS5D01G142500 | InterPro:LRAT-like_dom | PANTHER:PTHR13943 | PANTHER:PTHR13943:SF32 | PFAM:PF04970 |
| SEG:seg | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:228551354..228554011
Molecular Weight (calculated)
33403.9 Da
IEP (calculated)
6.335
GRAVY (calculated)
0.028
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGVLSNRVG REALAAGDHI YSWRTAYIYA HHGIYAGDGM VIHFTRAAGH EIGTGTFLDK FLFSSSPTTA DGPPCEKCGH LIKPQGVIMS CLDCFLDGGS
101: LYLFDYAVSP PFFLAKARGG TCTMAPSDAA QLVVHRAKHL LNNGFGMYSL FKNNCEDFAI YCKTELLVET AYSVGRSGQL ASLTAAFSAV ASSPLRFLTT
201: SASGLAIVTS GMYCVGRYVS DMGVRRDVIK VPVERLVEHW VNNVTPALPQ GATQAETAMP GGSPELPGEG ELAKTATPEG SLELPGEGEL AKKECYGEDS
301: PCCSLHRTNC GYF
101: LYLFDYAVSP PFFLAKARGG TCTMAPSDAA QLVVHRAKHL LNNGFGMYSL FKNNCEDFAI YCKTELLVET AYSVGRSGQL ASLTAAFSAV ASSPLRFLTT
201: SASGLAIVTS GMYCVGRYVS DMGVRRDVIK VPVERLVEHW VNNVTPALPQ GATQAETAMP GGSPELPGEG ELAKTATPEG SLELPGEGEL AKKECYGEDS
301: PCCSLHRTNC GYF
001: MGFLSNKISR DDVKPGDHIY SWRQAYIYAH HGIYVGNGQV NHFTRGDGQE TGTGTFLDNI IVSSSHNHGD NPCPDCGDRS NLGGVISSCL ECFLAGGDLY
101: VFEYSVSPAI FLAKPRGGVC TIASSDPPEE VIYRANFLLQ NGFGVYNVFK NNCEDFAIYC KTGLLVANTD VGRSGQAASI VAAASVLLSS PLRFVAGFGG
201: LAVAGYGMYC TSRLVSDIGM RWDVSKVPVE RLVADVACMS DMEAKPEDEK TT
101: VFEYSVSPAI FLAKPRGGVC TIASSDPPEE VIYRANFLLQ NGFGVYNVFK NNCEDFAIYC KTGLLVANTD VGRSGQAASI VAAASVLLSS PLRFVAGFGG
201: LAVAGYGMYC TSRLVSDIGM RWDVSKVPVE RLVADVACMS DMEAKPEDEK TT
Arabidopsis Description
At3g02700 [Source:UniProtKB/TrEMBL;Acc:Q9M872]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.