Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G275200.1 | Wheat | cytosol | 96.01 | 96.01 |
| HORVU1Hr1G074130.1 | Barley | cytosol | 94.57 | 94.91 |
| TraesCS1B01G284400.1 | Wheat | cytosol | 88.04 | 88.04 |
| EES19605 | Sorghum | cytosol | 78.26 | 78.55 |
| PGSC0003DMT400055040 | Potato | cytosol | 63.41 | 67.83 |
| Solyc01g007110.2.1 | Tomato | cytosol | 63.04 | 67.44 |
| Bra005893.1-P | Field mustard | cytosol | 63.04 | 66.92 |
| VIT_08s0105g00270.t01 | Wine grape | cytosol | 63.41 | 66.79 |
| CDY55757 | Canola | cytosol | 62.68 | 66.54 |
| CDX81002 | Canola | cytosol | 62.32 | 66.15 |
| AT5G06370.1 | Thale cress | cytosol | 61.96 | 66.02 |
| KRH32851 | Soybean | cytosol | 59.78 | 63.71 |
| KRH72187 | Soybean | cytosol | 59.42 | 63.32 |
| VIT_04s0023g02850.t01 | Wine grape | mitochondrion, peroxisome, vacuole | 26.09 | 47.68 |
| TraesCS7D01G270700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 48.55 | 47.52 |
| TraesCS5D01G321200.1 | Wheat | cytosol | 46.01 | 47.39 |
| TraesCS5D01G142500.1 | Wheat | mitochondrion | 48.19 | 42.49 |
| TraesCS6D01G405400.1 | Wheat | cytosol | 11.96 | 17.55 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G274800.1 | EnsemblPlantsGene:TraesCS1D01G274800 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0071284 | InterPro:LRAT-like_dom |
| PANTHER:PTHR13943 | PANTHER:PTHR13943:SF44 | PFAM:PF04970 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr1D:-:370345327..370347413
Molecular Weight (calculated)
29197.0 Da
IEP (calculated)
7.924
GRAVY (calculated)
0.190
Length
276 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLLSNRIGK ESLKAGDHIY SWRAAWVYAH HGIYVGDDKV IHFTRGRDQE VGTGTVIDFL LVSSGPNRST TPCLVCSSEE ATTAAETNGV TSSCLSCFLA
101: GGALYRFEYD VNPALFLAKV RGGTCTLAAT DPGEVVVRRA KYLLTNGFRC YSLFKNNCED FAIYCKTGLL VAEQGNVGLG QSGQAVSIIG GPLAAVVSTP
201: FRLVTTNIYG VAVMAVGVYC VSRYAGDIGN RRDVLKLEVE DLTAGLASGR IRPANISQLA TPGQVQAPAV TTLVAA
101: GGALYRFEYD VNPALFLAKV RGGTCTLAAT DPGEVVVRRA KYLLTNGFRC YSLFKNNCED FAIYCKTGLL VAEQGNVGLG QSGQAVSIIG GPLAAVVSTP
201: FRLVTTNIYG VAVMAVGVYC VSRYAGDIGN RRDVLKLEVE DLTAGLASGR IRPANISQLA TPGQVQAPAV TTLVAA
001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV IHFTRRGQEV GTGTVLDLIL VSSGPSRNHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS
Arabidopsis Description
AT5g06370/MHF15_11 [Source:UniProtKB/TrEMBL;Acc:Q93V51]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.