Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 2
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G115210.1 | |
| HORVU2Hr1G116450.1 | |
| HORVU7Hr1G050760.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06370.1 | HORVU2Hr1G115210.1 | AT1G14340.1 | 21798944 |
| AT5G06370.1 | HORVU2Hr1G116450.1 | AT3G55290.1 | 21798944 |
| AT5G06370.1 | HORVU7Hr1G050760.2 | AT3G55290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G274800.1 | Wheat | cytosol | 94.91 | 94.57 |
| TraesCS1A01G275200.1 | Wheat | cytosol | 93.09 | 92.75 |
| TraesCS1B01G284400.1 | Wheat | cytosol | 85.82 | 85.51 |
| EES19605 | Sorghum | cytosol | 78.55 | 78.55 |
| PGSC0003DMT400055040 | Potato | cytosol | 62.91 | 67.05 |
| Bra005893.1-P | Field mustard | cytosol | 62.91 | 66.54 |
| VIT_08s0105g00270.t01 | Wine grape | cytosol | 63.27 | 66.41 |
| Solyc01g007110.2.1 | Tomato | cytosol | 62.18 | 66.28 |
| CDY55757 | Canola | cytosol | 62.55 | 66.15 |
| CDX81002 | Canola | cytosol | 62.18 | 65.77 |
| AT5G06370.1 | Thale cress | cytosol | 61.82 | 65.64 |
| KRH32851 | Soybean | cytosol | 61.09 | 64.86 |
| KRH72187 | Soybean | cytosol | 60.73 | 64.48 |
| HORVU7Hr1G056880.1 | Barley | cytosol | 50.18 | 49.11 |
| HORVU5Hr1G043560.3 | Barley | mitochondrion | 50.18 | 46.15 |
| VIT_04s0023g02850.t01 | Wine grape | mitochondrion, peroxisome, vacuole | 25.09 | 45.7 |
| HORVU5Hr1G080870.3 | Barley | plastid | 41.09 | 33.63 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G074130.1 | EnsemblPlantsGene:HORVU1Hr1G074130 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0071284 | InterPro:LRAT-like_dom |
| PANTHER:PTHR13943 | PANTHER:PTHR13943:SF44 | PFAM:PF04970 | UniParc:UPI000296A8DF | UniProt:M0ZCC4 | MapMan:35.2 |
Description
No Description!
Coordinates
chrchr1H:+:506767745..506770889
Molecular Weight (calculated)
29138.9 Da
IEP (calculated)
7.653
GRAVY (calculated)
0.200
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLLSNRIGK ESLKAGDHIY SWRAAWVYAH HGIYVGDDKV IHFTRGRDQE VGTGTVIDFL LVSSGPNRSS TPCLVCSSDE VTAATETNGV TSSCLSCFLS
101: GGALYRFEYD VNPALFLAKV RGGTCTLAAT DSDEVVVRRA KYLLSNGFRC YSLFKNNCED FAIYCKTGLL VAEGNVGLGQ SGQAVSIIGG PLAAVVSTPF
201: RLVTTNIYGM AVMAVGVYCV SRYAGDIGNR RDVLKVEVEE LTAGLASGRI RAANITQLAT PGQVQAPAVT TLVAA
101: GGALYRFEYD VNPALFLAKV RGGTCTLAAT DSDEVVVRRA KYLLSNGFRC YSLFKNNCED FAIYCKTGLL VAEGNVGLGQ SGQAVSIIGG PLAAVVSTPF
201: RLVTTNIYGM AVMAVGVYCV SRYAGDIGNR RDVLKVEVEE LTAGLASGRI RAANITQLAT PGQVQAPAVT TLVAA
001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV IHFTRRGQEV GTGTVLDLIL VSSGPSRNHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS
Arabidopsis Description
AT5g06370/MHF15_11 [Source:UniProtKB/TrEMBL;Acc:Q93V51]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.