Factsheet for Solyc01g007110.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 2
plasma membrane 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g007200.2.1
Solyc10g006860.2.1
Solyc10g080890.1.1
Solyc10g080900.1.1
Solyc12g036510.1.1
Solyc12g044940.1.1
Solyc12g045030.1.1
Solyc12g100220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06370.1	Solyc05g007200.2.1	AT1G14340.1	21798944
AT5G06370.1	Solyc10g006860.2.1	AT3G55290.1	21798944
AT5G06370.1	Solyc10g080890.1.1	AT3G55290.1	21798944
AT5G06370.1	Solyc10g080900.1.1	AT3G55290.1	21798944
AT5G06370.1	Solyc12g036510.1.1	AT3G55290.1	21798944
AT5G06370.1	Solyc12g044940.1.1	AT3G55290.1	21798944
AT5G06370.1	Solyc12g045030.1.1	AT3G55290.1	21798944
AT5G06370.1	Solyc12g100220.1.1	AT3G55290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055040	Potato	cytosol	97.67	97.67
VIT_08s0105g00270.t01	Wine grape	cytosol	79.07	77.86
Bra005893.1-P	Field mustard	cytosol	77.52	76.92
CDX81002	Canola	cytosol	77.52	76.92
CDY55757	Canola	cytosol	77.13	76.54
AT5G06370.1	Thale cress	cytosol	76.36	76.06
KRH32851	Soybean	cytosol	75.19	74.9
KRH72187	Soybean	cytosol	75.19	74.9
EES19605	Sorghum	cytosol	70.16	65.82
TraesCS1A01G275200.1	Wheat	cytosol	67.83	63.41
TraesCS1B01G284400.1	Wheat	cytosol	67.44	63.04
TraesCS1D01G274800.1	Wheat	cytosol	67.44	63.04
HORVU1Hr1G074130.1	Barley	cytosol	66.28	62.18
VIT_04s0023g02850.t01	Wine grape	mitochondrion, peroxisome, vacuole	32.95	56.29
Solyc02g081580.2.1	Tomato	cytosol	53.49	51.11
Solyc01g096150.2.1	Tomato	cytosol	48.84	49.61
Solyc05g050520.2.1	Tomato	cytosol	46.9	47.45
Solyc12g055850.1.1	Tomato	cytosol	52.33	47.2

Protein Annotations

EnsemblPlants:Solyc01g007110.2.1	EnsemblPlantsGene:Solyc01g007110.2	Gene3D:3.90.1720.10	InterPro:LRAT-like_dom	InterPro:Papain_like_cys_pep_sf	PANTHER:PTHR13943
PANTHER:PTHR13943:SF44	PFAM:PF04970	SEG:seg	SUPFAM:SSF54001	UniParc:UPI00027626F3	UniProt:K4ASS7
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr1:+:1660222..1663543

Molecular Weight (calculated)

27671.4 Da

IEP (calculated)

7.791

GRAVY (calculated)

0.209

Length

258 amino acids

Sequence
(BLAST)

001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDNKV IHFTRRGQEV GTGTILDHIL VSSIPNRSTV PCTVCTPPSD GHGVVSSCLD CFLAGGILYR
101: FEYAVTPAIF LAKARGGTCT LAVSDPDDIV VHRANYLLTN GFGLYNVFKN NCEDFAIYSK TGLLVVDDST MGQSGQAVSI IGGPLAAVMS TPLRLVTTNV
201: YGMVATAVGV YCASRYAADI GMRRDVMKVS AEDLTTRLTT GLLRVVEPSL AVLPPTTS

Best Arabidopsis Sequence Match ( AT5G06370.1 )
(BLAST)

001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV IHFTRRGQEV GTGTVLDLIL VSSGPSRNHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS

Arabidopsis Description

AT5g06370/MHF15_11 [Source:UniProtKB/TrEMBL;Acc:Q93V51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.