Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005893.1-P | Field mustard | cytosol | 92.66 | 92.31 |
| CDY55757 | Canola | cytosol | 92.28 | 91.92 |
| CDX81002 | Canola | cytosol | 91.12 | 90.77 |
| PGSC0003DMT400055040 | Potato | cytosol | 77.22 | 77.52 |
| Solyc01g007110.2.1 | Tomato | cytosol | 76.06 | 76.36 |
| VIT_08s0105g00270.t01 | Wine grape | cytosol | 77.22 | 76.34 |
| KRH32851 | Soybean | cytosol | 71.81 | 71.81 |
| KRH72187 | Soybean | cytosol | 71.43 | 71.43 |
| EES19605 | Sorghum | cytosol | 66.8 | 62.91 |
| TraesCS1B01G284400.1 | Wheat | cytosol | 66.8 | 62.68 |
| TraesCS1A01G275200.1 | Wheat | cytosol | 66.41 | 62.32 |
| TraesCS1D01G274800.1 | Wheat | cytosol | 66.02 | 61.96 |
| HORVU1Hr1G074130.1 | Barley | cytosol | 65.64 | 61.82 |
| VIT_04s0023g02850.t01 | Wine grape | mitochondrion, peroxisome, vacuole | 32.05 | 54.97 |
| AT3G02700.1 | Thale cress | cytosol | 51.35 | 52.78 |
| AT1G01225.1 | Thale cress | cytosol | 48.26 | 48.08 |
| AT5G16330.1 | Thale cress | cytosol | 44.02 | 47.11 |
| AT4G00905.1 | Thale cress | cytosol | 46.72 | 46.01 |
| AT5G16360.1 | Thale cress | cytosol | 48.65 | 44.52 |
Protein Annotations
| Gene3D:3.90.1720.10 | MapMan:35.2 | EntrezGene:830525 | UniProt:A0A178URB6 | ProteinID:AED91007.1 | EMBL:AF380637 |
| EMBL:AK226465 | ArrayExpress:AT5G06370 | EnsemblPlantsGene:AT5G06370 | RefSeq:AT5G06370 | TAIR:AT5G06370 | RefSeq:AT5G06370-TAIR-G |
| EnsemblPlants:AT5G06370.1 | TAIR:AT5G06370.1 | EMBL:AY054134 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0071284 |
| InterPro:LRAT-like_dom | RefSeq:NP_568167.1 | ProteinID:OAO95502.1 | PFAM:PF04970 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR13943 | PANTHER:PTHR13943:SF44 | UniProt:Q93V51 | UniParc:UPI00000A8177 |
Description
AT5g06370/MHF15_11 [Source:UniProtKB/TrEMBL;Acc:Q93V51]
Coordinates
chr5:-:1947005..1948612
Molecular Weight (calculated)
27848.6 Da
IEP (calculated)
7.970
GRAVY (calculated)
0.135
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV IHFTRRGQEV GTGTVLDLIL VSSGPSRNHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.