Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032627.1-P | Field mustard | cytosol | 86.15 | 85.82 |
| CDY37998 | Canola | cytosol | 86.92 | 84.01 |
| PGSC0003DMT400000664 | Potato | cytosol | 73.08 | 74.8 |
| Solyc01g096150.2.1 | Tomato | cytosol | 72.31 | 74.02 |
| VIT_15s0046g00120.t01 | Wine grape | cytosol | 72.69 | 72.14 |
| KRG97211 | Soybean | cytosol | 71.54 | 71.81 |
| KRH68934 | Soybean | cytosol | 70.77 | 71.32 |
| AT4G00905.1 | Thale cress | cytosol | 70.38 | 69.58 |
| Solyc05g050520.2.1 | Tomato | cytosol | 67.31 | 68.63 |
| GSMUA_Achr9P00880_001 | Banana | cytosol | 63.46 | 61.11 |
| Os09t0526800-01 | Rice | cytosol | 61.92 | 60.07 |
| EER99225 | Sorghum | cytosol | 61.92 | 60.07 |
| Zm00001d021248_P002 | Maize | cytosol | 61.54 | 59.7 |
| TraesCS5B01G315900.1 | Wheat | cytosol | 61.15 | 59.33 |
| TraesCS5D01G321200.1 | Wheat | cytosol | 61.15 | 59.33 |
| TraesCS5A01G314900.1 | Wheat | cytosol, mitochondrion, nucleus, peroxisome | 60.77 | 58.96 |
| Zm00001d006180_P001 | Maize | cytosol | 60.38 | 58.58 |
| HORVU7Hr1G056880.1 | Barley | cytosol | 60.0 | 55.52 |
| TraesCS7D01G270700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 60.0 | 55.32 |
| TraesCS7B01G168500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 60.0 | 55.32 |
| TraesCS7A01G270500.1 | Wheat | mitochondrion, nucleus, peroxisome, plastid | 59.62 | 54.96 |
| Os08t0546900-01 | Rice | cytosol, plasma membrane | 52.31 | 51.91 |
| EES14126 | Sorghum | nucleus | 58.85 | 51.0 |
| Zm00001d052741_P001 | Maize | cytosol | 54.62 | 50.0 |
| AT3G02700.1 | Thale cress | cytosol | 47.31 | 48.81 |
| Zm00001d031737_P001 | Maize | cytosol | 54.23 | 48.62 |
| AT5G06370.1 | Thale cress | cytosol | 48.08 | 48.26 |
| AT5G16330.1 | Thale cress | cytosol | 40.0 | 42.98 |
| HORVU5Hr1G080870.3 | Barley | plastid | 54.23 | 41.96 |
| AT5G16360.1 | Thale cress | cytosol | 43.46 | 39.93 |
Protein Annotations
| MapMan:35.2 | EntrezGene:839358 | ProteinID:AEE27256.1 | ArrayExpress:AT1G01225 | EnsemblPlantsGene:AT1G01225 | RefSeq:AT1G01225 |
| TAIR:AT1G01225 | RefSeq:AT1G01225-TAIR-G | EnsemblPlants:AT1G01225.1 | TAIR:AT1G01225.1 | Unigene:At.42658 | EMBL:BT024776 |
| InterPro:LRAT-like_dom | RefSeq:NP_563621.1 | PFAM:PF04970 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PANTHER:PTHR13943 | PANTHER:PTHR13943:SF32 | UniProt:Q29PY0 | UniParc:UPI0000162BDD | SEG:seg | : |
Description
At1g01225 [Source:UniProtKB/TrEMBL;Acc:Q29PY0]
Coordinates
chr1:+:95935..97407
Molecular Weight (calculated)
28401.5 Da
IEP (calculated)
4.481
GRAVY (calculated)
-0.097
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLLTNKIER EELKPGDHIY TYRAIFAYSH HGIFVGGSKV VHFRPEHNPM DSSTSSISSS SSEDICSIFP DCGFRQPDSG VVLSCLDCFL KNGSLYCFEY
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.