CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
peroxisome 1
plastid 1
cytosol 2
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052741_P001	Maize	cytosol	72.67	76.76
HORVU7Hr1G056880.1	Barley	cytosol	71.33	76.16
Os08t0546900-01	Rice	cytosol, plasma membrane	66.33	75.95
TraesCS7D01G270700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	71.33	75.89
TraesCS7B01G168500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	70.67	75.18
TraesCS7A01G270500.1	Wheat	mitochondrion, nucleus, peroxisome, plastid	70.67	75.18
Zm00001d031737_P001	Maize	cytosol	65.0	67.24
EER99225	Sorghum	cytosol	60.0	67.16
GSMUA_Achr9P00880_001	Banana	cytosol	58.67	65.19
PGSC0003DMT400000664	Potato	cytosol	53.0	62.6
Solyc01g096150.2.1	Tomato	cytosol	52.67	62.2
VIT_15s0046g00120.t01	Wine grape	cytosol	53.33	61.07
KRG97211	Soybean	cytosol	52.0	60.23
CDY51720	Canola	cytosol	49.0	59.51
KRH68934	Soybean	cytosol	51.0	59.3
AT1G01225.1	Thale cress	cytosol	51.0	58.85
Bra037403.1-P	Field mustard	cytosol	48.33	58.23
Solyc05g050520.2.1	Tomato	cytosol	49.33	58.04
Bra032627.1-P	Field mustard	cytosol	50.0	57.47
CDY07154	Canola	cytosol	47.33	57.03
CDY37998	Canola	cytosol	50.0	55.76
AT4G00905.1	Thale cress	cytosol	48.33	55.13
PGSC0003DMT400012897	Potato	mitochondrion, nucleus	49.0	52.5
Solyc12g055850.1.1	Tomato	cytosol	48.33	50.7
EES19605	Sorghum	cytosol	45.67	49.82
KXG36301	Sorghum	cytosol	43.33	46.26
EES15505	Sorghum	cytosol	13.33	21.62

Protein Annotations

EnsemblPlants:EES14126	EnsemblPlantsGene:SORBI_3007G180200	EntrezGene:8060551	InterPro:LRAT-like_dom	PANTHER:PTHR13943	PANTHER:PTHR13943:SF43
PFAM:PF04970	ProteinID:EES14126	ProteinID:EES14126.1	RefSeq:XP_002444631.1	SEG:seg	UniParc:UPI0001A87C4A
UniProt:C5YH59	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:61366688..61370740

Molecular Weight (calculated)

31538.8 Da

IEP (calculated)

8.474

GRAVY (calculated)

-0.067

Length

300 amino acids

Sequence
(BLAST)

001: MGLLSHRVER SEMRPGDHIY TWRAGYTYSH HGIYVGGSKV VHFTRKKEAG TAGLDSAIAV SSLLLSQGGA DECPTFPDCG FQLPDSGVVL TCLDCFLRGG
101: ALHRFEYGVP AAAFLAKLRG GTCTTARADT SDAAVRRAMH LLQNGFGDYD VFENNCEDFA LYCKTGLLPA AAAGGDGDGD GDGGTGTGIG MIGRSGQAAS
201: AVGVPLAALF STPFKLLAAG PLGMAAVTAG VYCAGRYITD IGVRKDVVKV EVEDLAAHLG WRRAKAQEAA AAVKKQQQQP EKKKAAKSLL PLKRKREICV

Best Arabidopsis Sequence Match ( AT1G01225.1 )
(BLAST)

001: MGLLTNKIER EELKPGDHIY TYRAIFAYSH HGIFVGGSKV VHFRPEHNPM DSSTSSISSS SSEDICSIFP DCGFRQPDSG VVLSCLDCFL KNGSLYCFEY
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR

Arabidopsis Description

At1g01225 [Source:UniProtKB/TrEMBL;Acc:Q29PY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.