Factsheet for GSMUA_Achr9P00880_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99225	Sorghum	cytosol	70.37	70.9
Zm00001d021248_P002	Maize	cytosol	70.0	70.52
Zm00001d006180_P001	Maize	cytosol	70.0	70.52
TraesCS5D01G321200.1	Wheat	cytosol	68.52	69.03
TraesCS5B01G315900.1	Wheat	cytosol	68.52	69.03
VIT_15s0046g00120.t01	Wine grape	cytosol	66.67	68.7
Solyc01g096150.2.1	Tomato	cytosol	64.44	68.5
PGSC0003DMT400000664	Potato	cytosol	64.44	68.5
TraesCS5A01G314900.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	67.41	67.91
Os09t0526800-01	Rice	cytosol	66.67	67.16
KRG97211	Soybean	cytosol	64.07	66.8
KRH68934	Soybean	cytosol	63.7	66.67
HORVU7Hr1G056880.1	Barley	cytosol	68.15	65.48
TraesCS7A01G270500.1	Wheat	mitochondrion, nucleus, peroxisome, plastid	67.78	64.89
TraesCS7B01G168500.1	Wheat	cytosol, mitochondrion, nucleus, plastid	67.78	64.89
Solyc05g050520.2.1	Tomato	cytosol	60.74	64.31
Bra032627.1-P	Field mustard	cytosol	61.85	63.98
TraesCS7D01G270700.1	Wheat	cytosol, mitochondrion, nucleus, plastid	66.67	63.83
AT1G01225.1	Thale cress	cytosol	61.11	63.46
CDY51720	Canola	cytosol	57.78	63.16
CDY07154	Canola	cytosol	57.78	62.65
Bra037403.1-P	Field mustard	cytosol	57.41	62.25
CDY37998	Canola	cytosol	61.85	62.08
Os08t0546900-01	Rice	cytosol, plasma membrane	59.63	61.45
Zm00001d052741_P001	Maize	cytosol	63.33	60.21
AT4G00905.1	Thale cress	cytosol	58.15	59.7
EES14126	Sorghum	nucleus	65.19	58.67
Solyc12g055850.1.1	Tomato	cytosol	58.15	54.9
PGSC0003DMT400012897	Potato	mitochondrion, nucleus	56.3	54.29
Zm00001d031737_P001	Maize	cytosol	58.15	54.14
HORVU5Hr1G080870.3	Barley	plastid	61.48	49.4
GSMUA_Achr7P05990_001	Banana	cytosol	44.81	47.64

Protein Annotations

EnsemblPlants:GSMUA_Achr9P00880_001	EnsemblPlants:GSMUA_Achr9T00880_001	EnsemblPlantsGene:GSMUA_Achr9G00880_001	InterPro:LRAT-like_dom	PANTHER:PTHR13943	PANTHER:PTHR13943:SF32
PFAM:PF04970	SEG:seg	UniParc:UPI000295F45C	UniProt:M0TWE5	MapMan:35.2	:

Description

NC domain-containing protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G00880_001]

Coordinates

chr9:+:644431..647054

Molecular Weight (calculated)

29109.6 Da

IEP (calculated)

6.749

GRAVY (calculated)

-0.051

Length

270 amino acids

Sequence
(BLAST)

001: MGLLSNRVER TEIKAGDHIY SWRAAYTYSH HGIYVGGSKV VHFTRKKDTS DGINSSSSSS LSSGVPSVCP TFPDCGFHQS NSGVILSCLD CFLGNGSLYC
101: FEYGVPPSVF LAKVRGGTCT TAESDPPETV INRAMYLLQN GFGNYDVFEN NCEDFALYCK TGLLSLEELG IGRSGQASSF FGVPLAALFS TPFKLLAAGP
201: VGMATVTAGM YCAGRYITDI GVRKDVVKVA VEDLTANLGW RRCPMERARG KDCDALASVA SIEEEKRQHL

Best Arabidopsis Sequence Match ( AT1G01225.1 )
(BLAST)

001: MGLLTNKIER EELKPGDHIY TYRAIFAYSH HGIFVGGSKV VHFRPEHNPM DSSTSSISSS SSEDICSIFP DCGFRQPDSG VVLSCLDCFL KNGSLYCFEY
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR

Arabidopsis Description

At1g01225 [Source:UniProtKB/TrEMBL;Acc:Q29PY0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.