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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane, cytosol

Predictor Summary:
  • nucleus 2
  • plastid 2
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, plasma membrane
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS7A01G270500.1 Wheat mitochondrion, nucleus, peroxisome, plastid 78.24 72.69
TraesCS7B01G168500.1 Wheat cytosol, mitochondrion, nucleus, plastid 77.86 72.34
HORVU7Hr1G056880.1 Barley cytosol 77.48 72.24
TraesCS7D01G270700.1 Wheat cytosol, mitochondrion, nucleus, plastid 76.72 71.28
EES14126 Sorghum nucleus 75.95 66.33
Os09t0526800-01 Rice cytosol 67.18 65.67
GSMUA_Achr9P00880_001 Banana cytosol 61.45 59.63
Zm00001d052741_P001 Maize cytosol 64.12 59.15
PGSC0003DMT400000664 Potato cytosol 54.2 55.91
Zm00001d031737_P001 Maize cytosol 61.45 55.52
Solyc01g096150.2.1 Tomato cytosol 53.82 55.51
VIT_15s0046g00120.t01 Wine grape cytosol 54.2 54.2
Solyc05g050520.2.1 Tomato cytosol 52.67 54.12
KRG97211 Soybean cytosol 52.29 52.9
CDY51720 Canola cytosol 49.62 52.63
AT1G01225.1 Thale cress cytosol 51.91 52.31
KRH68934 Soybean cytosol 51.15 51.94
Bra037403.1-P Field mustard cytosol 48.85 51.41
Bra032627.1-P Field mustard cytosol 51.15 51.34
CDY07154 Canola cytosol 48.47 51.0
CDY37998 Canola cytosol 51.15 49.81
AT4G00905.1 Thale cress cytosol 48.09 47.91
PGSC0003DMT400012897 Potato mitochondrion, nucleus 50.38 47.14
Solyc12g055850.1.1 Tomato cytosol 50.38 46.15
Os05t0310600-01 Rice cytosol 41.6 38.79
Protein Annotations
EnsemblPlants:Os08t0546900-01EnsemblPlantsGene:Os08g0546900InterPro:LRAT-like_domPANTHER:PTHR13943PANTHER:PTHR13943:SF43PFAM:PF04970
ProteinID:BAT06547.1SEG:segUniParc:UPI0003938CA1UniProt:A0A0P0XJY5MapMan:35.2:
Description
Similar to NC domain-containing protein. (Os08t0546900-01)
Coordinates
chr8:-:27393304..27396084
Molecular Weight (calculated)
27877.6 Da
IEP (calculated)
8.142
GRAVY (calculated)
0.005
Length
262 amino acids
Sequence
(BLAST)
001: TWVLQYSGIY VGGSKVVHFT RKKEAGTAGL DSAIAISSLL SQGSPECPTF PDCGFQLPDS GVVLTCVDCF LRGGSLHGFE YGVPPAVFLA KLRGGTCTTA
101: AADPPDAVVR RAMHLLQNGF GSYDVFENNC EDFALYCKTG LLPADEPGSI GRSGQASSAI GVPLAALLST PFKLLAAGPL GMAAVTAGMY CAGRYITDIG
201: VRKDVVKVEV ENLSAHLGWR RAKAEEEMAM KKQQPSSHDT KVKKSLLPLK RKRDNFCEII TS
Best Arabidopsis Sequence Match ( AT1G01225.1 )
(BLAST)
001: MGLLTNKIER EELKPGDHIY TYRAIFAYSH HGIFVGGSKV VHFRPEHNPM DSSTSSISSS SSEDICSIFP DCGFRQPDSG VVLSCLDCFL KNGSLYCFEY
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR
Arabidopsis Description
At1g01225 [Source:UniProtKB/TrEMBL;Acc:Q29PY0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.