Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032627.1-P | Field mustard | cytosol | 92.19 | 95.02 |
| AT1G01225.1 | Thale cress | cytosol | 84.01 | 86.92 |
| CDY07154 | Canola | cytosol | 69.89 | 75.5 |
| CDY51720 | Canola | cytosol | 68.4 | 74.49 |
| KRG97211 | Soybean | cytosol | 70.26 | 72.97 |
| PGSC0003DMT400000664 | Potato | cytosol | 68.4 | 72.44 |
| Solyc01g096150.2.1 | Tomato | cytosol | 68.03 | 72.05 |
| KRH68934 | Soybean | cytosol | 68.77 | 71.71 |
| VIT_15s0046g00120.t01 | Wine grape | cytosol | 69.14 | 70.99 |
| Solyc05g050520.2.1 | Tomato | cytosol | 64.68 | 68.24 |
| GSMUA_Achr9P00880_001 | Banana | cytosol | 62.08 | 61.85 |
| EER99225 | Sorghum | cytosol | 60.59 | 60.82 |
| Zm00001d021248_P002 | Maize | cytosol | 60.22 | 60.45 |
| Os09t0526800-01 | Rice | cytosol | 60.22 | 60.45 |
| Zm00001d006180_P001 | Maize | cytosol | 59.11 | 59.33 |
| TraesCS5D01G321200.1 | Wheat | cytosol | 59.11 | 59.33 |
| TraesCS5A01G314900.1 | Wheat | cytosol, mitochondrion, nucleus, peroxisome | 59.11 | 59.33 |
| TraesCS5B01G315900.1 | Wheat | cytosol | 58.74 | 58.96 |
| TraesCS7D01G270700.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 57.99 | 55.32 |
| TraesCS7B01G168500.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 57.99 | 55.32 |
| TraesCS7A01G270500.1 | Wheat | mitochondrion, nucleus, peroxisome, plastid | 57.62 | 54.96 |
| HORVU7Hr1G056880.1 | Barley | cytosol | 57.25 | 54.8 |
| Os08t0546900-01 | Rice | cytosol, plasma membrane | 49.81 | 51.15 |
| Zm00001d052741_P001 | Maize | cytosol | 52.79 | 50.0 |
| EES14126 | Sorghum | nucleus | 55.76 | 50.0 |
| CDY55757 | Canola | cytosol | 46.47 | 48.08 |
| Zm00001d031737_P001 | Maize | cytosol | 51.3 | 47.59 |
| CDX81002 | Canola | cytosol | 45.72 | 47.31 |
| CDY55574 | Canola | cytosol | 43.12 | 45.85 |
| CDX78682 | Canola | cytosol | 40.15 | 45.38 |
| CDY67201 | Canola | cytosol | 40.89 | 45.27 |
| CDY38121 | Canola | cytosol | 38.29 | 45.18 |
| CDX70686 | Canola | cytosol | 39.78 | 44.58 |
| CDY38122 | Canola | cytosol | 42.75 | 43.89 |
| CDX69451 | Canola | cytosol | 42.01 | 43.8 |
| CDY53737 | Canola | cytosol | 45.35 | 43.26 |
| CDX85508 | Canola | cytosol | 33.46 | 43.06 |
| HORVU5Hr1G080870.3 | Barley | plastid | 52.42 | 41.96 |
| CDY72287 | Canola | cytosol | 38.66 | 39.85 |
| CDY55575 | Canola | cytosol | 37.55 | 39.76 |
| CDX78683 | Canola | cytosol | 41.26 | 36.88 |
| CDX70687 | Canola | plastid | 36.06 | 36.74 |
Protein Annotations
| EnsemblPlants:CDY37998 | EnsemblPlantsGene:GSBRNA2T00065052001 | InterPro:LRAT-like_dom | ncoils:Coil | PANTHER:PTHR13943 | PANTHER:PTHR13943:SF32 |
| PFAM:PF04970 | ProteinID:CDY37998 | ProteinID:CDY37998.1 | SEG:seg | UniParc:UPI0004EE135F | UniProt:A0A078HMD9 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaCnng08590DBnaCnng08590D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMD9]
Coordinates
chrLK032414:+:37284..38766
Molecular Weight (calculated)
29448.6 Da
IEP (calculated)
4.420
GRAVY (calculated)
-0.143
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MGLLTNKMER EELKAGDHIY TYRAVFAYSH HGIFVGGSKV VHFRPEHNLN SSSSSSPMES FTSASSSTED ICPTFPDCGF RQPNSGVVLS CLDCFLKNGS
101: LYCFEYGVSP SVFLTKVRGG TCTTAQSDPT DSVIHRAMYL LQNGFGNYDI FKNNCEDFAL YCKTGLLIMD KLGVGRSGQA SSIVGAPLAA VLSSPFSLLI
201: PNPIGVATVT AGMYCMSRYA TDIGVRRDVV KVSVEDLALN LDVKSIEQVE EEEEEEEEEE EDSDTEFVR
101: LYCFEYGVSP SVFLTKVRGG TCTTAQSDPT DSVIHRAMYL LQNGFGNYDI FKNNCEDFAL YCKTGLLIMD KLGVGRSGQA SSIVGAPLAA VLSSPFSLLI
201: PNPIGVATVT AGMYCMSRYA TDIGVRRDVV KVSVEDLALN LDVKSIEQVE EEEEEEEEEE EDSDTEFVR
001: MGLLTNKIER EELKPGDHIY TYRAIFAYSH HGIFVGGSKV VHFRPEHNPM DSSTSSISSS SSEDICSIFP DCGFRQPDSG VVLSCLDCFL KNGSLYCFEY
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR
101: GVSPSVFLTK VRGGTCTTAQ SDTTDSVIHR AMYLLQNGFG NYDIFKNNCE DFALYCKTGL LIMDKLGVGR SGQASSIVGA PLAALLSSPF KLLIPSPIGV
201: ATVTAGMYCM SRYATDIGVR SDVIKVSVED LALNLDVKTI EQGEEEEEDE EEDSDTDYVR
Arabidopsis Description
At1g01225 [Source:UniProtKB/TrEMBL;Acc:Q29PY0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.