CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008622.1-P	Field mustard	cytosol	72.44	74.19
VIT_04s0069g01180.t01	Wine grape	cytosol	53.54	55.74
CDY67201	Canola	cytosol	52.36	54.73
KRG98048	Soybean	cytosol	51.18	53.5
CDX78682	Canola	cytosol	49.21	52.52
CDX70686	Canola	cytosol	49.61	52.5
CDY38122	Canola	cytosol	53.54	51.91
CDY55574	Canola	cytosol	51.57	51.78
CDX85508	Canola	cytosol	42.52	51.67
KRG98046	Soybean	cytosol	30.32	51.33
CDX69451	Canola	cytosol	51.97	51.16
CDY38121	Canola	cytosol	44.88	50.0
GSMUA_Achr7P05990_001	Banana	cytosol	49.61	49.61
KRH30736	Soybean	cytosol, peroxisome, plastid	38.58	49.0
CDY53737	Canola	cytosol	54.33	48.94
Solyc02g081580.2.1	Tomato	cytosol	50.79	47.78
CDY72287	Canola	cytosol	48.82	47.51
KRH30737	Soybean	cytosol	46.85	47.41
PGSC0003DMT400045756	Potato	cytosol	50.0	47.04
CDX81002	Canola	cytosol	47.64	46.54
CDY55757	Canola	cytosol	47.24	46.15
VIT_00s0270g00030.t01	Wine grape	cytosol	49.21	44.8
KXG36301	Sorghum	cytosol	49.21	44.48
Os05t0310600-01	Rice	cytosol	48.82	44.13
CDX70687	Canola	plastid	45.67	43.94
CDX78683	Canola	cytosol	50.39	42.52
HORVU5Hr1G043560.3	Barley	mitochondrion	50.0	42.47
CDY51720	Canola	cytosol	40.16	41.3
TraesCS5D01G142500.1	Wheat	mitochondrion	50.79	41.21
Zm00001d021614_P001	Maize	mitochondrion	49.61	41.04
CDY07154	Canola	cytosol	38.98	39.76
CDY37998	Canola	cytosol	39.76	37.55
TraesCS5A01G135900.1	Wheat	mitochondrion	50.0	36.6
KRG98047	Soybean	cytosol, golgi, peroxisome	10.24	23.42

Protein Annotations

EnsemblPlants:CDY55575	EnsemblPlantsGene:GSBRNA2T00017038001	Gene3D:3.90.1720.10	InterPro:LRAT-like_dom	InterPro:Papain_like_cys_pep_sf	KEGG:00261+3.4.-.-
KEGG:00310+3.4.-.-	KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	PANTHER:PTHR13943	PANTHER:PTHR13943:SF41	PFAM:PF04970
ProteinID:CDY55575	ProteinID:CDY55575.1	SEG:seg	SUPFAM:SSF54001	UniParc:UPI0004EF00EE	UniProt:A0A078IYS3
MapMan:35.2	:	:	:	:	:

Description

BnaC09g41480DBnaC09g41480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IYS3]

Coordinates

chrLK033413:-:41649..42721

Molecular Weight (calculated)

27700.0 Da

IEP (calculated)

8.253

GRAVY (calculated)

-0.157

Length

254 amino acids

Sequence
(BLAST)

001: MGLFSNKISR EEVKPGDHIY SWRTAYVYAH HGIYVGDNKV IHFTRGGGRQ TETGTFLDKL VVSSSPNYPQ CLVCKDHSSF NGDKVITSCL DCFLAGGNLY
101: LFKYNVSRSS FLAKPRGGTC TLAPSDPPED VLVRANFQLH MDGWFGDYDV TENNCEDFAI YCKTGLLVCK KNRFGTSGQV NAAAAASLAL ALHACGLSML
201: GVGVYCYGRV ASDVSRNGDV IKVPAKKLVS ILESDRTSPR EGWLSIAGPK FRGE

Best Arabidopsis Sequence Match ( AT3G02700.1 )
(BLAST)

001: MGFLSNKISR DDVKPGDHIY SWRQAYIYAH HGIYVGNGQV NHFTRGDGQE TGTGTFLDNI IVSSSHNHGD NPCPDCGDRS NLGGVISSCL ECFLAGGDLY
101: VFEYSVSPAI FLAKPRGGVC TIASSDPPEE VIYRANFLLQ NGFGVYNVFK NNCEDFAIYC KTGLLVANTD VGRSGQAASI VAAASVLLSS PLRFVAGFGG
201: LAVAGYGMYC TSRLVSDIGM RWDVSKVPVE RLVADVACMS DMEAKPEDEK TT

Arabidopsis Description

At3g02700 [Source:UniProtKB/TrEMBL;Acc:Q9M872]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.