CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY38122	Canola	cytosol	85.17	67.94
Bra023560.1-P	Field mustard	cytosol	89.0	64.14
CDY67201	Canola	cytosol	68.42	58.85
CDY55574	Canola	cytosol	68.42	56.52
CDX69451	Canola	cytosol	68.9	55.81
CDX70686	Canola	cytosol	57.42	50.0
CDX78682	Canola	cytosol	56.94	50.0
VIT_04s0069g01180.t01	Wine grape	cytosol	56.94	48.77
AT5G16330.1	Thale cress	cytosol	56.46	48.76
AT5G16360.1	Thale cress	cytosol	64.11	47.35
KRG98048	Soybean	cytosol	53.59	46.09
CDY53737	Canola	cytosol	59.81	44.33
CDY38121	Canola	cytosol	47.85	43.86
CDY72287	Canola	cytosol	54.55	43.68
Solyc02g081580.2.1	Tomato	cytosol	55.02	42.59
CDY55575	Canola	cytosol	51.67	42.52
GSMUA_Achr7P05990_001	Banana	cytosol	51.67	42.52
PGSC0003DMT400045756	Potato	cytosol	54.07	41.85
KRH30737	Soybean	cytosol	49.28	41.04
CDX70687	Canola	plastid	51.67	40.91
CDX78683	Canola	cytosol	58.85	40.86
CDX81002	Canola	cytosol	49.76	40.0
KRH30736	Soybean	cytosol, peroxisome, plastid	38.28	40.0
CDY55757	Canola	cytosol	49.28	39.62
KRG98046	Soybean	cytosol	28.23	39.33
KXG36301	Sorghum	cytosol	52.63	39.15
Os05t0310600-01	Rice	cytosol	51.67	38.43
VIT_00s0270g00030.t01	Wine grape	cytosol	50.72	37.99
HORVU5Hr1G043560.3	Barley	mitochondrion	53.59	37.46
CDY51720	Canola	cytosol	44.02	37.25
Zm00001d021614_P001	Maize	mitochondrion	53.11	36.16
CDY07154	Canola	cytosol	42.58	35.74
TraesCS5D01G142500.1	Wheat	mitochondrion	52.63	35.14
CDY37998	Canola	cytosol	43.06	33.46
TraesCS5A01G135900.1	Wheat	mitochondrion	53.59	32.28
KRG98047	Soybean	cytosol, golgi, peroxisome	3.35	6.31

Protein Annotations

EnsemblPlants:CDX85508	EnsemblPlantsGene:GSBRNA2T00143215001	InterPro:LRAT-like_dom	PANTHER:PTHR13943	PANTHER:PTHR13943:SF41	PFAM:PF04970
ProteinID:CDX85508	ProteinID:CDX85508.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE6991	MapMan:35.2

Description

BnaA02g03050D

Coordinates

chrLK031842:+:431707..432510

Molecular Weight (calculated)

22363.9 Da

IEP (calculated)

5.624

GRAVY (calculated)

0.167

Length

209 amino acids

Sequence
(BLAST)

001: MFTGIYVGDG KVIHFTRGGG LEIGTGTILD KIIVSSVPHH GDNPCPDCGD QTNLNGVISS CLDCFLSGGN LYLFEYNVSK AIFLAKQRGG TCTIAASDPP
101: EDVVARAKFL LLRNGFGEYH LLDNNCEDFA IYCKTGLLVL ALGVGTTIAL TGYGNYCIGR LAYDVGVRKD VRKVPVEELV ALMAVIQGKS ESDNNNNRSS
201: LNLISICFG

Best Arabidopsis Sequence Match ( AT3G02700.1 )
(BLAST)

001: MGFLSNKISR DDVKPGDHIY SWRQAYIYAH HGIYVGNGQV NHFTRGDGQE TGTGTFLDNI IVSSSHNHGD NPCPDCGDRS NLGGVISSCL ECFLAGGDLY
101: VFEYSVSPAI FLAKPRGGVC TIASSDPPEE VIYRANFLLQ NGFGVYNVFK NNCEDFAIYC KTGLLVANTD VGRSGQAASI VAAASVLLSS PLRFVAGFGG
201: LAVAGYGMYC TSRLVSDIGM RWDVSKVPVE RLVADVACMS DMEAKPEDEK TT

Arabidopsis Description

At3g02700 [Source:UniProtKB/TrEMBL;Acc:Q9M872]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.