CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55574	Canola	cytosol	86.42	83.0
CDX69451	Canola	cytosol	88.07	82.95
Bra008623.1-P	Field mustard	cytosol	84.36	70.45
CDX85508	Canola	cytosol	58.85	68.42
CDY38122	Canola	cytosol	73.25	67.94
CDX70686	Canola	cytosol	60.49	61.25
CDX78682	Canola	cytosol	58.85	60.08
VIT_04s0069g01180.t01	Wine grape	cytosol	58.02	57.79
AT5G16330.1	Thale cress	cytosol	56.79	57.02
CDY38121	Canola	cytosol	51.85	55.26
KRG98048	Soybean	cytosol	55.14	55.14
AT5G16360.1	Thale cress	cytosol	63.79	54.77
CDX70687	Canola	plastid	57.61	53.03
GSMUA_Achr7P05990_001	Banana	cytosol	55.14	52.76
KRG98046	Soybean	cytosol	32.51	52.67
CDY55575	Canola	cytosol	54.73	52.36
Solyc02g081580.2.1	Tomato	cytosol	56.79	51.11
CDY72287	Canola	cytosol	54.32	50.57
CDX78683	Canola	cytosol	62.14	50.17
CDY53737	Canola	cytosol	58.02	50.0
KRH30736	Soybean	cytosol, peroxisome, plastid	41.15	50.0
PGSC0003DMT400045756	Potato	cytosol	54.73	49.26
CDY55757	Canola	cytosol	51.44	48.08
CDX81002	Canola	cytosol	51.44	48.08
KXG36301	Sorghum	cytosol	55.14	47.69
KRH30737	Soybean	cytosol	48.97	47.41
VIT_00s0270g00030.t01	Wine grape	cytosol	53.91	46.95
CDY51720	Canola	cytosol	45.27	44.53
Os05t0310600-01	Rice	cytosol	51.44	44.48
Zm00001d021614_P001	Maize	mitochondrion	55.14	43.65
HORVU5Hr1G043560.3	Barley	mitochondrion	53.09	43.14
CDY07154	Canola	cytosol	44.03	42.97
TraesCS5D01G142500.1	Wheat	mitochondrion	53.5	41.53
CDY37998	Canola	cytosol	45.27	40.89
TraesCS5A01G135900.1	Wheat	mitochondrion	53.09	37.18
KRG98047	Soybean	cytosol, golgi, peroxisome	11.11	24.32

Protein Annotations

EnsemblPlants:CDY67201	EnsemblPlantsGene:GSBRNA2T00059749001	Gene3D:3.90.1720.10	InterPro:LRAT-like_dom	KEGG:00261+3.4.-.-	KEGG:00310+3.4.-.-
KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	PANTHER:PTHR13943	PANTHER:PTHR13943:SF41	PFAM:PF04970	ProteinID:CDY67201
ProteinID:CDY67201.1	UniParc:UPI0004EF37FF	UniProt:A0A078JN71	MapMan:35.2	:	:

Description

BnaCnng53920DBnaCnng53920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JN71]

Coordinates

chrLK035855:-:690..1925

Molecular Weight (calculated)

26278.3 Da

IEP (calculated)

7.110

GRAVY (calculated)

-0.063

Length

243 amino acids

Sequence
(BLAST)

001: MGLFSNKISR DELKAGDHIY SWRSYIYSHH GIYVGAGKVI HFTRRGGLEI GTGTYLDKII EISVPRHGGD NPCPNCGGQS TLDGVISSCL DCFLAGGNLY
101: LFQYDVSKAI LVAKQRGGTC TTAPSDPPEE VVHRARYLLW GNGFGEYHLL DNNCEDFAIY CKTGLLVFSV TKSGSSSQVN AVCAAGGVAS LALSKYCIGR
201: VAYDVGVRKD VRKVPVEELA TLMAVLEGNI LDNLDITNSD KNK

Best Arabidopsis Sequence Match ( AT5G16360.1 )
(BLAST)

001: MGLFSHKISR DDLKPGDHIY SWRNAYIYSH HGVYVGDEKV IHFTRGGGLE FGTGTVLDKI IDISIPNHGR RDKKCIDCGD QSNLGGVISS CLDCFLAGGN
101: LHLFEYSASP SIFLAKRGGT CTIASSDPCD EVISRAKFLL LQNGFGEYDL LDNNCEDFAI YCKTGLFVLS VATKFGCSGQ ANSVSAAGGV VALTLKVLGV
201: KKKSSSGHED DSVVSVVNQF ISSTVKYVVP GIGGLALAEY GNYCIGRLFY DIGVRKDACK VSVEELVAFV GAKQNILEGK KSN

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FFE7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.