CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70687	Canola	plastid	61.13	69.7
CDY67201	Canola	cytosol	50.17	62.14
CDX69451	Canola	cytosol	52.82	61.63
AT5G16330.1	Thale cress	cytosol	49.17	61.16
CDX78682	Canola	cytosol	48.17	60.92
CDY55574	Canola	cytosol	50.83	60.47
CDY38122	Canola	cytosol	52.16	59.92
CDX70686	Canola	cytosol	47.51	59.58
CDX85508	Canola	cytosol	40.86	58.85
KRG98048	Soybean	cytosol	46.18	57.2
VIT_04s0069g01180.t01	Wine grape	cytosol	45.85	56.56
CDY38121	Canola	cytosol	41.86	55.26
AT5G16360.1	Thale cress	cytosol	51.83	55.12
CDY53737	Canola	cytosol	49.5	52.84
CDY72287	Canola	cytosol	45.18	52.11
KRG98046	Soybean	cytosol	25.25	50.67
CDY55575	Canola	cytosol	42.52	50.39
GSMUA_Achr7P05990_001	Banana	cytosol	42.52	50.39
Solyc02g081580.2.1	Tomato	cytosol	44.85	50.0
CDX81002	Canola	cytosol	42.86	49.62
KRH30736	Soybean	cytosol, peroxisome, plastid	32.56	49.0
CDY55757	Canola	cytosol	42.19	48.85
KRH30737	Soybean	cytosol	40.2	48.21
PGSC0003DMT400045756	Potato	cytosol	43.19	48.15
KXG36301	Sorghum	cytosol	44.19	47.33
CDY51720	Canola	cytosol	36.88	44.94
Os05t0310600-01	Rice	cytosol	41.86	44.84
VIT_00s0270g00030.t01	Wine grape	cytosol	40.86	44.09
Zm00001d021614_P001	Maize	mitochondrion	44.52	43.65
CDY07154	Canola	cytosol	35.88	43.37
HORVU5Hr1G043560.3	Barley	mitochondrion	42.52	42.81
CDY37998	Canola	cytosol	36.88	41.26
TraesCS5D01G142500.1	Wheat	mitochondrion	42.52	40.89
TraesCS5A01G135900.1	Wheat	mitochondrion	43.52	37.75
KRG98047	Soybean	cytosol, golgi, peroxisome	9.3	25.23

Protein Annotations

EnsemblPlants:CDX78683	EnsemblPlantsGene:GSBRNA2T00130108001	Gene3D:3.90.1720.10	InterPro:LRAT-like_dom	KEGG:00261+3.4.-.-	KEGG:00310+3.4.-.-
KEGG:00550+3.4.-.-	KEGG:00780+3.4.-.-	PANTHER:PTHR13943	PANTHER:PTHR13943:SF41	PFAM:PF04970	ProteinID:CDX78683
ProteinID:CDX78683.1	SEG:seg	UniParc:UPI0004EF472D	MapMan:35.2	:	:

Description

BnaA03g05950D

Coordinates

chrLK031815:-:1816911..1818123

Molecular Weight (calculated)

32349.3 Da

IEP (calculated)

7.854

GRAVY (calculated)

-0.105

Length

301 amino acids

Sequence
(BLAST)

001: MQTKSQESWF VVNRKESKVK NLTQEERIIS WSRGASNISS VSLKKMGFLS QQISRDELKP GDHIYSWRMA YIYSHHGIYV GNGDVIHFTC GGGLETRTGT
101: FVDNIIVSSV PNHGGDNPCP NCGDQSNLDG VICSCLDCFL AGGNLYLFEY GVSGPIFMAK PRGGICTTAV SDSSDETVNR ARHLLSNKNG FGAYDLLRNN
201: CEDFAIYCKT GLIVLSKLGS SGQANSWSAV RGSVSVGSAA RLVVSGVAGV GVVTLAAGYG NYCYGRLCAD IGVRSDASKV PVEDLVTLIA IIERRDDKKS
301: S

Best Arabidopsis Sequence Match ( AT3G02700.1 )
(BLAST)

001: MGFLSNKISR DDVKPGDHIY SWRQAYIYAH HGIYVGNGQV NHFTRGDGQE TGTGTFLDNI IVSSSHNHGD NPCPDCGDRS NLGGVISSCL ECFLAGGDLY
101: VFEYSVSPAI FLAKPRGGVC TIASSDPPEE VIYRANFLLQ NGFGVYNVFK NNCEDFAIYC KTGLLVANTD VGRSGQAASI VAAASVLLSS PLRFVAGFGG
201: LAVAGYGMYC TSRLVSDIGM RWDVSKVPVE RLVADVACMS DMEAKPEDEK TT

Arabidopsis Description

At3g02700 [Source:UniProtKB/TrEMBL;Acc:Q9M872]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.