Factsheet for VIT_04s0069g01180.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH17250	Soybean	cytosol	75.41	72.44
AT3G02700.1	Thale cress	cytosol	68.44	66.27
GSMUA_Achr7P05990_001	Banana	cytosol	68.85	66.14
Solyc02g081580.2.1	Tomato	cytosol	72.13	65.19
PGSC0003DMT400045756	Potato	cytosol	71.72	64.81
Bra021419.1-P	Field mustard	cytosol	68.85	62.92
VIT_00s0270g00030.t01	Wine grape	cytosol	71.72	62.72
CDY53737	Canola	cytosol	68.85	59.57
KXG36301	Sorghum	cytosol	67.21	58.36
CDY67201	Canola	cytosol	57.79	58.02
Os05t0310600-01	Rice	cytosol	66.39	57.65
CDX78682	Canola	cytosol	56.15	57.56
CDX70686	Canola	cytosol	56.15	57.08
CDX69451	Canola	cytosol	60.25	56.98
CDX85508	Canola	cytosol	48.77	56.94
CDY55574	Canola	cytosol	58.61	56.52
CDY38122	Canola	cytosol	60.25	56.11
Bra008622.1-P	Field mustard	cytosol	56.15	55.24
AT5G16330.1	Thale cress	cytosol	54.51	54.96
CDY38121	Canola	cytosol	51.23	54.82
CDY55575	Canola	cytosol	55.74	53.54
Zm00001d021614_P001	Maize	mitochondrion	67.21	53.42
HORVU5Hr1G043560.3	Barley	mitochondrion	65.16	53.18
VIT_08s0105g00270.t01	Wine grape	cytosol	56.15	52.29
Bra023560.1-P	Field mustard	cytosol	61.07	51.38
AT5G16360.1	Thale cress	cytosol	59.02	50.88
Bra008623.1-P	Field mustard	cytosol	60.66	50.86
TraesCS5D01G142500.1	Wheat	mitochondrion	65.16	50.8
Bra023561.1-P	Field mustard	cytosol	53.69	50.19
CDY72287	Canola	cytosol	53.28	49.81
VIT_15s0046g00120.t01	Wine grape	cytosol	50.41	46.95
CDX70687	Canola	plastid	50.0	46.21
CDX78683	Canola	cytosol	56.56	45.85
TraesCS5A01G135900.1	Wheat	mitochondrion	65.16	45.82
VIT_04s0023g02850.t01	Wine grape	mitochondrion, peroxisome, vacuole	27.87	45.03

Protein Annotations

ArrayExpress:VIT_04s0069g01180	EMBL:FN595500	EnsemblPlants:VIT_04s0069g01180.t01	EnsemblPlantsGene:VIT_04s0069g01180	EntrezGene:100251247	EntrezGene:LOC100251247
Gene3D:3.90.1720.10	InterPro:LRAT-like_dom	PANTHER:PTHR13943	PANTHER:PTHR13943:SF32	PFAM:PF04970	ProteinID:CBI24034
ProteinID:CBI24034.3	RefSeq:XP_002264628	RefSeq:XP_002264628.1	SEG:seg	TIGR:TC52191	unigene:Vvi.1072
UniParc:UPI0001BE2546	UniProt:D7T0G2	wikigene:100251247	wikigene:LOC100251247	MapMan:35.2	:

Description

No Description!

Coordinates

chr4:+:10021558..10031443

Molecular Weight (calculated)

26117.2 Da

IEP (calculated)

7.163

GRAVY (calculated)

0.174

Length

244 amino acids

Sequence
(BLAST)

001: MGVLSNKISR EELKPGDHIY SWRTAHLYAH HGIYIGEEKV IHFTRGAGQE IGTGTVLDRI IVSSSPSHST GNPCPRCGDQ ARLDGVISSC IDCFLAEGDL
101: YLFQYSVSPV IFLAKARGGT CTLAASDPPA DVIHRASFLL QNGFGDYHIF RNNCEDFAIY CKTGLLVFTS ISVGRSGQAA SFLAAASAVV SSPLRFLTTS
201: FSGLAVVGCA MYCASRIVSD IGVRRDVTKV PVERLVAGSS IDES

Best Arabidopsis Sequence Match ( AT3G02700.1 )
(BLAST)

001: MGFLSNKISR DDVKPGDHIY SWRQAYIYAH HGIYVGNGQV NHFTRGDGQE TGTGTFLDNI IVSSSHNHGD NPCPDCGDRS NLGGVISSCL ECFLAGGDLY
101: VFEYSVSPAI FLAKPRGGVC TIASSDPPEE VIYRANFLLQ NGFGVYNVFK NNCEDFAIYC KTGLLVANTD VGRSGQAASI VAAASVLLSS PLRFVAGFGG
201: LAVAGYGMYC TSRLVSDIGM RWDVSKVPVE RLVADVACMS DMEAKPEDEK TT

Arabidopsis Description

At3g02700 [Source:UniProtKB/TrEMBL;Acc:Q9M872]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.