Factsheet for Bra005893.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra016705.1-P
Bra019660.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06370.1	Bra016705.1-P	AT1G14340.1	21798944
AT5G06370.1	Bra019660.1-P	AT1G14340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY55757	Canola	cytosol	99.62	99.62
CDX81002	Canola	cytosol	97.69	97.69
AT5G06370.1	Thale cress	cytosol	92.31	92.66
PGSC0003DMT400055040	Potato	cytosol	78.08	78.68
VIT_08s0105g00270.t01	Wine grape	cytosol	79.23	78.63
Solyc01g007110.2.1	Tomato	cytosol	76.92	77.52
KRH32851	Soybean	cytosol	73.08	73.36
KRH72187	Soybean	cytosol	72.69	72.97
EES19605	Sorghum	cytosol	68.85	65.09
TraesCS1A01G275200.1	Wheat	cytosol	67.31	63.41
TraesCS1B01G284400.1	Wheat	cytosol	66.92	63.04
TraesCS1D01G274800.1	Wheat	cytosol	66.92	63.04
HORVU1Hr1G074130.1	Barley	cytosol	66.54	62.91
VIT_04s0023g02850.t01	Wine grape	mitochondrion, peroxisome, vacuole	32.69	56.29
Bra021419.1-P	Field mustard	cytosol	53.46	52.06
Bra008622.1-P	Field mustard	cytosol	46.15	48.39
Bra037403.1-P	Field mustard	cytosol	46.15	48.19
Bra032627.1-P	Field mustard	cytosol	47.31	47.13
Bra008623.1-P	Field mustard	cytosol	51.54	46.05
Bra023560.1-P	Field mustard	cytosol	50.0	44.83
Bra023561.1-P	Field mustard	cytosol	44.62	44.44

Protein Annotations

EnsemblPlants:Bra005893.1	EnsemblPlants:Bra005893.1-P	EnsemblPlantsGene:Bra005893	Gene3D:3.90.1720.10	GO:GO:0008150	GO:GO:0009987
GO:GO:0071284	InterPro:LRAT-like_dom	PANTHER:PTHR13943	PANTHER:PTHR13943:SF44	PFAM:PF04970	SEG:seg
UniParc:UPI000253F5EB	UniProt:M4CNV5	MapMan:35.2	:	:	:

Description

AT5G06370 (E=8e-135) | NC domain-containing protein

Coordinates

chrA03:-:1088128..1089202

Molecular Weight (calculated)

28006.7 Da

IEP (calculated)

8.158

GRAVY (calculated)

0.109

Length

260 amino acids

Sequence
(BLAST)

001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV IHFTRRGQEV GTGTVLDLIL VSSGPSRAHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LAKARGGTCT LAVSDPNEIT VHRANHLLRN GFGCYDVFKN NCEDFAIYCK TGLLVLEGRR TMGQSGQAVS IIGGPIAAVL STPMRLVTTN
201: IYGMAATAVS VYCASRYATD IGMRADVAKV EVEDLTRRLS VGLFQVVEPP VAAVALPNTS

Best Arabidopsis Sequence Match ( AT5G06370.1 )
(BLAST)

001: MGLLSNRIDR SSLKPGDHIY SWRTAYIYAH HGIYVGDDRV IHFTRRGQEV GTGTVLDLIL VSSGPSRNHT HCPTCVPPNE GHGVVSSCLN CFLAGGVLYR
101: FEYSVNAAHF LVKARGGTCT LAVADPNEIV VHRAKHLLQN GFGCYDVFKN NCEDFAIYCK TALLVLEGRT MGQSGQAVSI IGGPIAAVLS TPMRLLTTNV
201: YGMAATAIGV YCASRYATDI GMRADVAKVE AEDLTRRLSS GLFQVLDPPL AAIALPSTS

Arabidopsis Description

AT5g06370/MHF15_11 [Source:UniProtKB/TrEMBL;Acc:Q93V51]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.