Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G209000.1 | Wheat | cytosol, golgi, plasma membrane | 98.46 | 98.46 |
| TraesCS6D01G192500.1 | Wheat | cytosol, golgi, plasma membrane | 98.21 | 98.21 |
| HORVU6Hr1G053550.2 | Barley | cytosol, golgi, plasma membrane | 96.92 | 96.92 |
| Os02t0595100-01 | Rice | golgi | 86.15 | 90.81 |
| Os02t0594900-01 | Rice | cytosol, golgi, plasma membrane | 90.51 | 90.28 |
| Zm00001d050961_P001 | Maize | plasma membrane | 88.46 | 88.92 |
| KXG30544 | Sorghum | cytosol, golgi, plasma membrane | 88.46 | 88.92 |
| Zm00001d017085_P002 | Maize | golgi | 85.38 | 85.82 |
| GSMUA_Achr8P28540_001 | Banana | cytosol, golgi, plasma membrane | 77.95 | 78.15 |
| GSMUA_Achr9P07530_001 | Banana | cytosol, golgi, plasma membrane | 77.69 | 77.89 |
| TraesCS2B01G355800.1 | Wheat | cytosol | 77.44 | 77.84 |
| GSMUA_Achr6P12150_001 | Banana | cytosol, golgi, plasma membrane | 77.18 | 77.58 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, plasma membrane | 76.67 | 77.06 |
| GSMUA_Achr6P28040_001 | Banana | cytosol, golgi, plasma membrane | 76.15 | 76.55 |
| KRG97530 | Soybean | cytosol | 71.03 | 70.66 |
| KRH31342 | Soybean | cytosol | 69.74 | 69.39 |
| Bra004065.1-P | Field mustard | cytosol, endoplasmic reticulum, mitochondrion | 59.74 | 69.14 |
| KRG94031 | Soybean | cytosol, golgi, plasma membrane | 68.46 | 68.99 |
| Bra039107.1-P | Field mustard | cytosol | 52.31 | 68.46 |
| PGSC0003DMT400047881 | Potato | cytosol | 69.49 | 68.26 |
| AT5G14480.1 | Thale cress | cytosol | 67.69 | 68.22 |
| AT3G01620.1 | Thale cress | cytosol, golgi, plasma membrane | 67.69 | 68.04 |
| PGSC0003DMT400032896 | Potato | cytosol, golgi, plasma membrane | 67.18 | 67.53 |
| KRH59271 | Soybean | cytosol | 67.69 | 67.52 |
| CDX83706 | Canola | cytosol, golgi, plasma membrane | 66.92 | 67.1 |
| CDY21077 | Canola | cytosol | 67.44 | 67.09 |
| CDY34597 | Canola | cytosol | 67.44 | 67.09 |
| Solyc02g093430.2.1 | Tomato | cytosol, golgi, plasma membrane | 66.67 | 67.01 |
| CDX69577 | Canola | cytosol | 66.41 | 66.93 |
| CDX70567 | Canola | cytosol | 66.41 | 66.93 |
| AT3G27540.1 | Thale cress | cytosol, golgi, plasma membrane | 66.92 | 66.92 |
| Bra025284.1-P | Field mustard | cytosol | 66.67 | 66.84 |
| CDY13721 | Canola | cytosol | 66.67 | 66.84 |
| AT1G12990.1 | Thale cress | cytosol | 67.18 | 66.84 |
| Bra016746.1-P | Field mustard | cytosol | 67.18 | 66.84 |
| CDY09858 | Canola | cytosol | 66.15 | 66.67 |
| Bra019802.1-P | Field mustard | cytosol | 66.67 | 66.67 |
| Bra008753.1-P | Field mustard | cytosol | 66.15 | 66.67 |
| CDY19406 | Canola | cytosol | 66.92 | 66.58 |
| KRH43122 | Soybean | cytosol | 66.67 | 66.5 |
| CDX91060 | Canola | cytosol, golgi, plasma membrane | 66.15 | 66.49 |
| Bra006256.1-P | Field mustard | cytosol | 66.15 | 66.49 |
| CDX78579 | Canola | cytosol, golgi, plasma membrane | 66.15 | 66.49 |
| Solyc12g035470.1.1 | Tomato | cytosol | 65.9 | 66.24 |
| CDY68430 | Canola | cytosol, golgi, peroxisome | 65.9 | 66.24 |
| Bra023467.1-P | Field mustard | cytosol, golgi, peroxisome | 65.9 | 66.24 |
| PGSC0003DMT400040682 | Potato | cytosol | 65.9 | 66.24 |
| CDX98021 | Canola | cytosol | 66.67 | 66.16 |
| KRG93199 | Soybean | cytosol, golgi, plasma membrane | 65.38 | 66.06 |
| PGSC0003DMT400011491 | Potato | cytosol | 66.92 | 65.74 |
| AT1G67880.1 | Thale cress | golgi | 64.87 | 64.87 |
| CDY49064 | Canola | golgi, plasma membrane, plastid | 63.85 | 64.84 |
| CDY56530 | Canola | golgi | 65.13 | 64.8 |
| CDY37511 | Canola | golgi | 63.33 | 64.66 |
| CDY28838 | Canola | golgi | 64.87 | 64.54 |
| VIT_14s0066g00350.t01 | Wine grape | cytosol, golgi, plasma membrane | 67.95 | 64.16 |
| Solyc05g013580.2.1 | Tomato | cytosol | 54.36 | 61.99 |
| AT3G26445.1 | Thale cress | extracellular, golgi | 16.67 | 55.08 |
| TraesCS5B01G051200.1 | Wheat | golgi, mitochondrion | 48.21 | 50.54 |
| TraesCS6B01G103200.1 | Wheat | golgi | 46.67 | 47.89 |
| VIT_01s0137g00810.t01 | Wine grape | cytosol | 68.72 | 40.48 |
Protein Annotations
| KEGG:00510+2.4.1.144 | MapMan:35.2 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003830 | GO:GO:0005575 |
| GO:GO:0005975 | GO:GO:0006464 | GO:GO:0006487 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016740 | GO:GO:0019538 | InterPro:Glyco_trans_17 | PFAM:PF04724 |
| PANTHER:PTHR12224 | PANTHER:PTHR12224:SF1 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6B01G238000 | EnsemblPlants:TraesCS6B01G238000.1 | SEG:seg |
Description
No Description!
Coordinates
chr6B:-:413952808..413955080
Molecular Weight (calculated)
45494.9 Da
IEP (calculated)
7.565
GRAVY (calculated)
-0.206
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSAGYYTNC KKTDGICEGI CDGEHGSKAV LSMSRLKCAL RGFDLKALLF LLIGLPIIIF VIYVHGQKVT YFLRPIWEKP PKPFTVLPHY YHENVSMANL
101: CKLHGWKVRE APRRVFDTVL FSNELDILDI RWHELSPYVS EFVLLESNST FTGLEKKLHF KENRQKFEFA ESRLTYGMIG GRFVKGENPF VEESYQRVAL
201: DQLLKIAGIT DDDLLIMSDV DEIPSGHTIN LLRWCDFTPE ILHLQLKNYL YSFQFMLDDK SWRASVHRYR AGKTRYAHYR QTDDLLADSG WHCSFCFRYI
301: NDFVFKMKAY SHVDRIRFSY FLNPKRIQHV ICQGADLFDM LPEEYTFQDI IAKLGPIPST YSAVHLPAYL LEKADQYRYL LPGNCMRESG
101: CKLHGWKVRE APRRVFDTVL FSNELDILDI RWHELSPYVS EFVLLESNST FTGLEKKLHF KENRQKFEFA ESRLTYGMIG GRFVKGENPF VEESYQRVAL
201: DQLLKIAGIT DDDLLIMSDV DEIPSGHTIN LLRWCDFTPE ILHLQLKNYL YSFQFMLDDK SWRASVHRYR AGKTRYAHYR QTDDLLADSG WHCSFCFRYI
301: NDFVFKMKAY SHVDRIRFSY FLNPKRIQHV ICQGADLFDM LPEEYTFQDI IAKLGPIPST YSAVHLPAYL LEKADQYRYL LPGNCMRESG
001: MSDGYYSSKK TDDICDDVCG QDGSRAAKAF SRVRCVLRGF DFKTYIFFFT IVPIFIFGVY LHGQKLTYFL RPLWESPPKP FQTLPHYYHE NASMATLCSL
101: HGWKHRESPR RVFDAVLFSN EVDMLTIRWK ELYPYITQFV ILESNSTFTG LPKPLVFNGN RAKFEFAEPR LSYGNIAGRF KKGENPFVEE AYQRIALDQL
201: IRLAGIEEDD LLIMSDVDEI PSAHTINLLR WCDGYPPILH LQLKNYLYSF EYFVDNKSWR ASIHQYKPGK TRYAHFRQGN TLLADSGWHC SFCFRHISEF
301: IFKMKAYSHN DRVRFSHYLN PKRIQDVICK GTDLFDMLPE EYTFREIIGK LGPIPRSYSA VHLPAHLIEK AESYKYLLPG NCIRESG
101: HGWKHRESPR RVFDAVLFSN EVDMLTIRWK ELYPYITQFV ILESNSTFTG LPKPLVFNGN RAKFEFAEPR LSYGNIAGRF KKGENPFVEE AYQRIALDQL
201: IRLAGIEEDD LLIMSDVDEI PSAHTINLLR WCDGYPPILH LQLKNYLYSF EYFVDNKSWR ASIHQYKPGK TRYAHFRQGN TLLADSGWHC SFCFRHISEF
301: IFKMKAYSHN DRVRFSHYLN PKRIQDVICK GTDLFDMLPE EYTFREIIGK LGPIPRSYSA VHLPAHLIEK AESYKYLLPG NCIRESG
Arabidopsis Description
At5g14480 [Source:UniProtKB/TrEMBL;Acc:Q9LY81]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.