Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra025284.1-P | Field mustard | cytosol | 88.72 | 88.95 |
| CDX83706 | Canola | cytosol, golgi, plasma membrane | 88.46 | 88.69 |
| CDY13721 | Canola | cytosol | 88.46 | 88.69 |
| AT5G14480.1 | Thale cress | cytosol | 79.23 | 79.84 |
| KRG94031 | Soybean | cytosol, golgi, plasma membrane | 77.44 | 78.04 |
| AT3G01620.1 | Thale cress | cytosol, golgi, plasma membrane | 76.15 | 76.55 |
| KRG93199 | Soybean | cytosol, golgi, plasma membrane | 73.85 | 74.61 |
| Solyc12g035470.1.1 | Tomato | cytosol | 73.08 | 73.45 |
| Solyc02g093430.2.1 | Tomato | cytosol, golgi, plasma membrane | 73.08 | 73.45 |
| PGSC0003DMT400040682 | Potato | cytosol | 73.08 | 73.45 |
| PGSC0003DMT400032896 | Potato | cytosol, golgi, plasma membrane | 73.08 | 73.45 |
| AT1G12990.1 | Thale cress | cytosol | 73.08 | 72.7 |
| AT1G67880.1 | Thale cress | golgi | 72.05 | 72.05 |
| VIT_14s0066g00350.t01 | Wine grape | cytosol, golgi, plasma membrane | 75.38 | 71.19 |
| HORVU2Hr1G082670.1 | Barley | cytosol | 21.28 | 70.94 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, plasma membrane | 69.49 | 69.85 |
| GSMUA_Achr8P28540_001 | Banana | cytosol, golgi, plasma membrane | 69.49 | 69.67 |
| GSMUA_Achr6P12150_001 | Banana | cytosol, golgi, plasma membrane | 69.23 | 69.59 |
| EES12371 | Sorghum | cytosol, golgi, plasma membrane | 68.46 | 68.81 |
| Os02t0595100-01 | Rice | golgi | 64.87 | 68.38 |
| Os04t0477500-02 | Rice | cytosol, golgi, plasma membrane | 67.69 | 68.04 |
| GSMUA_Achr9P07530_001 | Banana | cytosol, golgi, plasma membrane | 67.69 | 67.87 |
| Zm00001d003292_P001 | Maize | plasma membrane | 67.44 | 67.78 |
| TraesCS6A01G209000.1 | Wheat | cytosol, golgi, plasma membrane | 67.44 | 67.44 |
| HORVU6Hr1G053550.2 | Barley | cytosol, golgi, plasma membrane | 67.18 | 67.18 |
| TraesCS6D01G192500.1 | Wheat | cytosol, golgi, plasma membrane | 67.18 | 67.18 |
| GSMUA_Achr6P28040_001 | Banana | cytosol, golgi, plasma membrane | 66.67 | 67.01 |
| TraesCS2A01G326200.1 | Wheat | cytosol, golgi, plasma membrane | 66.67 | 67.01 |
| TraesCS2D01G336600.1 | Wheat | cytosol | 66.67 | 67.01 |
| TraesCS6B01G238000.1 | Wheat | cytosol, golgi, plasma membrane | 66.92 | 66.92 |
| KXG30544 | Sorghum | cytosol, golgi, plasma membrane | 66.41 | 66.75 |
| TraesCS2B01G355800.1 | Wheat | cytosol | 66.41 | 66.75 |
| GSMUA_Achr11P... | Banana | cytosol | 65.9 | 66.41 |
| Zm00001d050961_P001 | Maize | plasma membrane | 65.38 | 65.72 |
| Os02t0594900-01 | Rice | cytosol, golgi, plasma membrane | 65.38 | 65.22 |
| Zm00001d017085_P002 | Maize | golgi | 64.62 | 64.95 |
| HORVU2Hr1G082660.5 | Barley | golgi, mitochondrion | 66.92 | 61.12 |
| AT2G13290.1 | Thale cress | golgi | 50.77 | 54.85 |
| AT3G26445.1 | Thale cress | extracellular, golgi | 16.15 | 53.39 |
Protein Annotations
| KEGG:00510+2.4.1.144 | MapMan:35.2 | EntrezGene:822376 | ProteinID:AEE77335.1 | ArrayExpress:AT3G27540 | EnsemblPlantsGene:AT3G27540 |
| RefSeq:AT3G27540 | TAIR:AT3G27540 | RefSeq:AT3G27540-TAIR-G | EnsemblPlants:AT3G27540.1 | TAIR:AT3G27540.1 | EMBL:AY099829 |
| ProteinID:BAB01284.1 | EMBL:BT000311 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003830 | GO:GO:0005575 |
| GO:GO:0005975 | GO:GO:0006464 | GO:GO:0006487 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 | GO:GO:0019538 |
| InterPro:Glyco_trans_17 | EMBL:KJ138810 | RefSeq:NP_189391.1 | PFAM:PF04724 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR12224 | PANTHER:PTHR12224:SF1 | UniProt:Q9LT58 | TMHMM:TMhelix |
| UniParc:UPI00000AC221 | : | : | : | : | : |
Description
Beta-1,4-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9LT58]
Coordinates
chr3:+:10205074..10207423
Molecular Weight (calculated)
45663.9 Da
IEP (calculated)
8.556
GRAVY (calculated)
-0.287
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDGYINSKK TDDICEDVCG QGSKAAKTIS RLKCVLKGFD LRTYLFLFVL MPFGILAIYL HGQKFTYFFR PLWESPPKPF QTIPHYYNEN VTMESLCSLH
101: GWGIRDSPRR VFDAVLFSNE KDLLTVRWNE LYPYVTQFVI LESNSTFTGL PKPLVFKSNK DQFKFVEPRL TYGTIGGRFR KGENPFVEEA YQRVALDQLL
201: RIAGIQEDDL LIMSDVDEIP SAHTINLLRW CDDIPPVLHL QLKNYLYSFE YYVDSKSWRA SIHRYSPGKT RYAHFRQSNV MLADSGWHCS FCFRYISEFI
301: FKMKAYSHSD RVRFSHYLNP RRIQDVICKG TDLFDMLPEE YTFKEIIGKM GPVPRSYSAV HLPSYLLYNA EQYKYLLPGN CIREKQTGFI
101: GWGIRDSPRR VFDAVLFSNE KDLLTVRWNE LYPYVTQFVI LESNSTFTGL PKPLVFKSNK DQFKFVEPRL TYGTIGGRFR KGENPFVEEA YQRVALDQLL
201: RIAGIQEDDL LIMSDVDEIP SAHTINLLRW CDDIPPVLHL QLKNYLYSFE YYVDSKSWRA SIHRYSPGKT RYAHFRQSNV MLADSGWHCS FCFRYISEFI
301: FKMKAYSHSD RVRFSHYLNP RRIQDVICKG TDLFDMLPEE YTFKEIIGKM GPVPRSYSAV HLPSYLLYNA EQYKYLLPGN CIREKQTGFI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.