Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra039107.1-P | Field mustard | cytosol | 68.3 | 88.93 |
| CDY49064 | Canola | golgi, plasma membrane, plastid | 84.54 | 85.42 |
| CDY37511 | Canola | golgi | 83.25 | 84.56 |
| AT5G14480.1 | Thale cress | cytosol | 81.44 | 81.65 |
| AT3G27540.1 | Thale cress | cytosol, golgi, plasma membrane | 76.55 | 76.15 |
| HORVU2Hr1G082670.1 | Barley | cytosol | 22.42 | 74.36 |
| KRG94031 | Soybean | cytosol, golgi, plasma membrane | 73.2 | 73.39 |
| PGSC0003DMT400032896 | Potato | cytosol, golgi, plasma membrane | 71.91 | 71.91 |
| Solyc02g093430.2.1 | Tomato | cytosol, golgi, plasma membrane | 71.91 | 71.91 |
| Solyc12g035470.1.1 | Tomato | cytosol | 71.39 | 71.39 |
| PGSC0003DMT400040682 | Potato | cytosol | 71.13 | 71.13 |
| KRG93199 | Soybean | cytosol, golgi, plasma membrane | 70.36 | 70.73 |
| GSMUA_Achr10P... | Banana | cytosol, golgi, plasma membrane | 69.85 | 69.85 |
| GSMUA_Achr6P12150_001 | Banana | cytosol, golgi, plasma membrane | 69.85 | 69.85 |
| GSMUA_Achr8P28540_001 | Banana | cytosol, golgi, plasma membrane | 69.33 | 69.15 |
| VIT_14s0066g00350.t01 | Wine grape | cytosol, golgi, plasma membrane | 73.45 | 69.01 |
| TraesCS6A01G209000.1 | Wheat | cytosol, golgi, plasma membrane | 68.04 | 67.69 |
| TraesCS6B01G238000.1 | Wheat | cytosol, golgi, plasma membrane | 68.04 | 67.69 |
| TraesCS6D01G192500.1 | Wheat | cytosol, golgi, plasma membrane | 68.04 | 67.69 |
| GSMUA_Achr9P07530_001 | Banana | cytosol, golgi, plasma membrane | 67.78 | 67.61 |
| Os02t0595100-01 | Rice | golgi | 64.43 | 67.57 |
| HORVU6Hr1G053550.2 | Barley | cytosol, golgi, plasma membrane | 67.78 | 67.44 |
| AT1G67880.1 | Thale cress | golgi | 67.53 | 67.18 |
| AT1G12990.1 | Thale cress | cytosol | 67.78 | 67.09 |
| KXG30544 | Sorghum | cytosol, golgi, plasma membrane | 66.75 | 66.75 |
| GSMUA_Achr6P28040_001 | Banana | cytosol, golgi, plasma membrane | 66.75 | 66.75 |
| TraesCS2A01G326200.1 | Wheat | cytosol, golgi, plasma membrane | 66.75 | 66.75 |
| TraesCS2D01G336600.1 | Wheat | cytosol | 66.75 | 66.75 |
| Zm00001d050961_P001 | Maize | plasma membrane | 66.75 | 66.75 |
| Os04t0477500-02 | Rice | cytosol, golgi, plasma membrane | 66.49 | 66.49 |
| TraesCS2B01G355800.1 | Wheat | cytosol | 66.49 | 66.49 |
| Os02t0594900-01 | Rice | cytosol, golgi, plasma membrane | 66.49 | 65.98 |
| GSMUA_Achr11P... | Banana | cytosol | 65.46 | 65.63 |
| EES12371 | Sorghum | cytosol, golgi, plasma membrane | 65.21 | 65.21 |
| Zm00001d003292_P001 | Maize | plasma membrane | 64.95 | 64.95 |
| Zm00001d017085_P002 | Maize | golgi | 64.95 | 64.95 |
| HORVU2Hr1G082660.5 | Barley | golgi, mitochondrion | 66.24 | 60.19 |
| AT2G13290.1 | Thale cress | golgi | 48.71 | 52.35 |
| AT3G26445.1 | Thale cress | extracellular, golgi | 15.21 | 50.0 |
Protein Annotations
| KEGG:00510+2.4.1.144 | MapMan:35.2 | EntrezGene:821102 | ProteinID:AAF01546.1 | ProteinID:AEE73696.1 | ArrayExpress:AT3G01620 |
| EnsemblPlantsGene:AT3G01620 | RefSeq:AT3G01620 | TAIR:AT3G01620 | RefSeq:AT3G01620-TAIR-G | EnsemblPlants:AT3G01620.1 | TAIR:AT3G01620.1 |
| Unigene:At.63552 | EMBL:BT002978 | EMBL:BT004421 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003830 |
| GO:GO:0005575 | GO:GO:0005975 | GO:GO:0006464 | GO:GO:0006487 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016740 | GO:GO:0016757 |
| GO:GO:0019538 | InterPro:Glyco_trans_17 | EMBL:KJ138847 | RefSeq:NP_186811.1 | PFAM:PF04724 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR12224 | PANTHER:PTHR12224:SF1 | UniProt:Q9SS93 |
| TMHMM:TMhelix | UniParc:UPI000000BE6F | SEG:seg | : | : | : |
Description
Beta-1,4-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9SS93]
Coordinates
chr3:-:235197..236968
Molecular Weight (calculated)
45321.6 Da
IEP (calculated)
8.759
GRAVY (calculated)
-0.347
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDGYRSSKK TDTICEDVCG QEGSRAGKAI SRLRCVLRGL DFKTFLFLFT LLPLFIFGIY LHGQKITYFL RPLWESPPKP FNILPHYYHE NTSMELLCNL
101: HGWKLRESPR RVFDAALFSN EIDMLTLRWN ELNPYITQFV LLESNSTFTG LSKQLAFADN REKNFKFVEP RLTYGNVGGR FKKGENPFVE ESFQRLALDQ
201: LIKLAGIKED DLLIMSDVDE IPSGHTINLL RWCDGFPPIL HLQLRNYLYS YEYYVDSKSW RASVHLYKPG KTRCAHFRQS NNLLTDSGWH CSFCFRHIND
301: FVFKMKAYSH TDRVRFLHYL NPRRIQDIIC KGTDLFDMLP EEHTFREIIG KLGPIPRSYS AVHLPGYLIQ NADSYKYLLP GNCKRESG
101: HGWKLRESPR RVFDAALFSN EIDMLTLRWN ELNPYITQFV LLESNSTFTG LSKQLAFADN REKNFKFVEP RLTYGNVGGR FKKGENPFVE ESFQRLALDQ
201: LIKLAGIKED DLLIMSDVDE IPSGHTINLL RWCDGFPPIL HLQLRNYLYS YEYYVDSKSW RASVHLYKPG KTRCAHFRQS NNLLTDSGWH CSFCFRHIND
301: FVFKMKAYSH TDRVRFLHYL NPRRIQDIIC KGTDLFDMLP EEHTFREIIG KLGPIPRSYS AVHLPGYLIQ NADSYKYLLP GNCKRESG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.