Factsheet for PGSC0003DMT400047881

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 1
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g013580.2.1	Tomato	cytosol	80.86	93.86
PGSC0003DMT400011491	Potato	cytosol	89.67	89.67
Bra004065.1-P	Field mustard	cytosol, endoplasmic reticulum, mitochondrion	68.01	80.12
KRH31342	Soybean	cytosol	76.57	77.55
KRG97530	Soybean	cytosol	76.57	77.55
CDY21077	Canola	cytosol	76.07	77.04
AT1G12990.1	Thale cress	cytosol	75.82	76.79
Bra016746.1-P	Field mustard	cytosol	75.82	76.79
CDY34597	Canola	cytosol	75.82	76.79
AT1G67880.1	Thale cress	golgi	75.06	76.41
CDY28838	Canola	golgi	75.06	76.02
CDY56530	Canola	golgi	74.56	75.51
CDY19406	Canola	cytosol	74.56	75.51
KRH43122	Soybean	cytosol	74.31	75.45
KRH59271	Soybean	cytosol	74.31	75.45
Bra019802.1-P	Field mustard	cytosol	74.06	75.38
PGSC0003DMT400040682	Potato	cytosol	73.55	75.26
PGSC0003DMT400032896	Potato	cytosol, golgi, plasma membrane	73.3	75.0
CDX98021	Canola	cytosol	73.8	74.55
HORVU2Hr1G082670.1	Barley	cytosol	20.91	70.94
TraesCS6A01G209000.1	Wheat	cytosol, golgi, plasma membrane	69.27	70.51
TraesCS6D01G192500.1	Wheat	cytosol, golgi, plasma membrane	69.02	70.26
HORVU6Hr1G053550.2	Barley	cytosol, golgi, plasma membrane	68.77	70.0
TraesCS6B01G238000.1	Wheat	cytosol, golgi, plasma membrane	68.26	69.49
Os02t0595100-01	Rice	golgi	64.74	69.46
Os02t0594900-01	Rice	cytosol, golgi, plasma membrane	67.51	68.54
KXG30544	Sorghum	cytosol, golgi, plasma membrane	66.75	68.3
GSMUA_Achr11P...	Banana	cytosol	66.5	68.22
Zm00001d050961_P001	Maize	plasma membrane	66.25	67.78
GSMUA_Achr8P28540_001	Banana	cytosol, golgi, plasma membrane	66.25	67.61
GSMUA_Achr6P28040_001	Banana	cytosol, golgi, plasma membrane	66.0	67.53
GSMUA_Achr10P...	Banana	cytosol, golgi, plasma membrane	66.0	67.53
GSMUA_Achr6P12150_001	Banana	cytosol, golgi, plasma membrane	65.74	67.27
Zm00001d017085_P002	Maize	golgi	65.49	67.01
GSMUA_Achr9P07530_001	Banana	cytosol, golgi, plasma membrane	65.49	66.84
Zm00001d003292_P001	Maize	plasma membrane	64.23	65.72
EES12371	Sorghum	cytosol, golgi, plasma membrane	64.23	65.72
Os04t0477500-02	Rice	cytosol, golgi, plasma membrane	63.73	65.21
TraesCS2D01G336600.1	Wheat	cytosol	63.22	64.69
TraesCS2A01G326200.1	Wheat	cytosol, golgi, plasma membrane	62.97	64.43
TraesCS2B01G355800.1	Wheat	cytosol	62.97	64.43
AT3G26445.1	Thale cress	extracellular, golgi	17.63	59.32
HORVU2Hr1G082660.5	Barley	golgi, mitochondrion	63.48	59.02
PGSC0003DMT400079376	Potato	golgi, mitochondrion	53.4	56.84
VIT_01s0137g00810.t01	Wine grape	cytosol	80.1	48.04

Protein Annotations

KEGG:00510+2.4.1.144	EntrezGene:102580443	MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0003830
GO:GO:0005575	GO:GO:0005975	GO:GO:0006464	GO:GO:0006487	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019538
InterPro:Glyco_trans_17	UniProt:M1BLL0	PFAM:PF04724	EnsemblPlantsGene:PGSC0003DMG400018611	PGSC:PGSC0003DMG400018611	EnsemblPlants:PGSC0003DMT400047881
PANTHER:PTHR12224	PANTHER:PTHR12224:SF4	TMHMM:TMhelix	UniParc:UPI000294887C	RefSeq:XP_006357599.1	:

Description

Glycosyl transferase family 17 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018611]

Coordinates

chr5:+:10459329..10461897

Molecular Weight (calculated)

46740.2 Da

IEP (calculated)

7.778

GRAVY (calculated)

-0.317

Length

397 amino acids

Sequence
(BLAST)

001: MWGITRFLEK AYIFEEGGSG YCSKKKDDIC NEGAGRALSM SRLKCALRGL DLKTYIFLFL FVPTCVFGIY LHGQKITYFL RPLWEKPPKP FHEMPHYYHE
101: NVSMESLCKL HGWGIREYPR RVFDAVLFSN EVEMLTIRWK ELYPYVTEFV LLESNSTFTG LPKPSYFANH RDQFEFVESR LTYGQIPGRF RKGENPFVEE
201: AYQRLALDYL LKQAGIQDDD LLIMSDVDEI PSRHTINLLR WCDDTPPVLH LRLKNYLYSF EFLVDSNSWR ASVHRYQSGK TRYAHYRQSD VILADAGWHC
301: SFCFHHISEF IFKMKAYSHF DRVRFSHFLN PKRVQKVICD GADLFDMLPE EYTFREIIGK MGPIPHSYSA VHLPAYLLEK ADQYKFLLPG NCMRESG

Best Arabidopsis Sequence Match ( AT1G12990.1 )
(BLAST)

001: MWWMMGEAGG HYCSKKTDDI CGGVCSQEPG RFFSFSRLCC ALRGVDMKTY IFLLVIVPTC VLAGYVHGQK ISYFLRPLWE SPPKPFHDIP HYYHENASME
101: TLCKLHGWGV RDYPRRVYDA VLFSNELDIL AVRWRELFPY ITQFVLLESN TTFTGLPKPL VFAAHRDEFK FIESRLTYGT VGGRFVKGQN PFYEEAYQRV
201: ALDQLLRIAG ITDDDLLLMS DVDEIPSRHT INLLRWCDEI PKILHLRLKN YLYSFEFLVD NKSWRASIHR YETGKTRYAH YRQSDEILAD AGWHCSFCFR
301: RISEFIFKMK AYSHNDRVRF GHFLNPKRVQ RVICKGADLF DMLPEEYTFK EIIGKMGPIP HSFSAVHLPS YLLENADKYR FLLPGNCIRE SE

Arabidopsis Description

Beta-1,4-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:F4HP06]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.