Factsheet for PGSC0003DMT400079376

Subcellular Localization

min:

: max

Winner_takes_all: golgi, mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
golgi 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008030.1.1	Tomato	mitochondrion	94.91	94.91
VIT_11s0016g05630.t01	Wine grape	mitochondrion	72.12	74.1
CDX81440	Canola	golgi	67.02	69.44
KRH03667	Soybean	golgi, mitochondrion	68.1	68.65
AT2G13290.1	Thale cress	golgi	66.22	68.42
KRH20138	Soybean	golgi, mitochondrion	67.83	68.38
CDX81441	Canola	golgi	66.22	68.04
CDY37205	Canola	golgi	66.22	68.04
Bra037205.1-P	Field mustard	golgi	65.68	67.49
GSMUA_Achr4P31720_001	Banana	mitochondrion	63.0	64.74
GSMUA_Achr7P01000_001	Banana	golgi	60.32	62.33
OQU79586	Sorghum	mitochondrion	54.42	55.77
Zm00001d041299_P001	Maize	golgi, mitochondrion	53.62	54.95
TraesCS5A01G046600.1	Wheat	golgi, mitochondrion, plastid	53.62	54.64
Os12t0611900-01	Rice	golgi, mitochondrion	53.08	54.4
TraesCS5D01G056900.1	Wheat	golgi, mitochondrion, plastid	53.08	54.1
HORVU6Hr1G013610.2	Barley	golgi, mitochondrion	55.5	53.91
TraesCSU01G026400.1	Wheat	golgi	54.16	53.44
TraesCS6B01G103200.1	Wheat	golgi	54.42	53.42
PGSC0003DMT400047881	Potato	cytosol	56.84	53.4
TraesCS5B01G051200.1	Wheat	golgi, mitochondrion	53.08	53.23
HORVU5Hr1G011270.1	Barley	golgi, plastid	53.08	53.23
PGSC0003DMT400011491	Potato	cytosol	56.57	53.15
TraesCSU01G026800.1	Wheat	mitochondrion, peroxisome, vacuole	54.16	53.02
PGSC0003DMT400032896	Potato	cytosol, golgi, plasma membrane	53.62	51.55
PGSC0003DMT400040682	Potato	cytosol	52.81	50.77
TraesCS6A01G077400.1	Wheat	mitochondrion	46.65	47.41

Protein Annotations

KEGG:00510+2.4.1.144	EntrezGene:102583339	MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0003830
GO:GO:0005575	GO:GO:0005975	GO:GO:0006464	GO:GO:0006487	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016740	GO:GO:0019538
InterPro:Glyco_trans_17	UniProt:M1D1Q7	PFAM:PF04724	EnsemblPlantsGene:PGSC0003DMG400030897	PGSC:PGSC0003DMG400030897	EnsemblPlants:PGSC0003DMT400079376
PANTHER:PTHR12224	PANTHER:PTHR12224:SF1	TMHMM:TMhelix	UniParc:UPI0002956133	RefSeq:XP_006358295.1	SEG:seg

Description

beta-1,4-N-acetylglucosaminyltransferase family protein [Source:Projected from Arabidopsis thaliana (AT2G13290) TAIR;Acc:AT2G13290]

Coordinates

chr7:+:4272805..4274246

Molecular Weight (calculated)

44172.6 Da

IEP (calculated)

8.895

GRAVY (calculated)

-0.256

Length

373 amino acids

Sequence
(BLAST)

001: MLGKLMPWSR MAPRHSRLIS RRSHGKVIFI VLLILVPILL FGIYLHFHKI SYFFRPLWDK PPPPFEHLPH YYAENVSMDN LCRLHGWTLR PEPRRVFDGI
101: IFSNELDLLE VRWRELYPYV TKFVVLEANT TFTGLPKPLY FSDHRERFAF AEDKIVHGVF PGRIASLELH EDPFKLEGQQ RIAMNRLLHA AGIFEDDLLI
201: MSDTDEIPSH HTIKLLQWCD GMPPVMHLEL RHYMYSFEFP VDYSSWRASV HIYNRWTKYR HSRQTDVILS DAGWHCSFCF RNLQDFVFKM TGYSHADRVR
301: RTNFLKYSRI QKLICEGADL YDMLPEEYSF QELIKKMGSI PRSASAVHLP THVIENTDKF RFLLPGGCQR SPR

Best Arabidopsis Sequence Match ( AT2G13290.1 )
(BLAST)

001: MTIRSLRKPP PVKLVFPTLI ILFLTCLLCI LTNFQTISYL FRPLWDKPPP PFKRIPHYYA ENVSMGHLCE LHGWTPRLEP RRVFDAIIFS NELDLLEVRW
101: RELEPYVSKF VILESNTTFT GIPKPLFFDS NKERFAFAEG KIVHGVFPGK KRSTGQPYED PFLLEGQQRV AMNWLLREAG VSDGDAVIMS DADEIPSPHT
201: VKFLQWCDGI PDVMHLEMRE YMYSFEFPVD YSSWRASVHI YSRKWTQYRH SRQTDLILSD AGWHCSFCFR RLNEFVFKMK GYSHADRVKR KEFLDYQRIQ
301: KHICKGYDLF DMLPEKYSFQ ELISKIGPIP PSASAVHLPA FLIQNAARFR FLLPGGCLRE P

Arabidopsis Description

Beta-1,4-N-acetylglucosaminyltransferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9SKF0]
SUBAcon: [golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.