Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G253800.1 | Wheat | cytosol | 98.81 | 98.81 |
| TraesCS1B01G263900.1 | Wheat | cytosol | 97.62 | 97.62 |
| Zm00001d010314_P001 | Maize | nucleus | 66.96 | 66.77 |
| Os05t0406000-01 | Rice | plasma membrane | 34.52 | 66.67 |
| Zm00001d038155_P001 | Maize | nucleus | 63.99 | 63.05 |
| KXG21969 | Sorghum | cytosol | 66.37 | 56.89 |
| PGSC0003DMT400081752 | Potato | nucleus | 51.79 | 52.73 |
| KRH02166 | Soybean | nucleus | 52.98 | 52.05 |
| Solyc01g080510.2.1 | Tomato | nucleus | 50.89 | 51.98 |
| VIT_05s0020g02240.t01 | Wine grape | nucleus | 51.19 | 51.81 |
| GSMUA_Achr11P... | Banana | cytosol | 50.89 | 51.35 |
| KRH11308 | Soybean | nucleus | 50.3 | 50.9 |
| KRH50950 | Soybean | nucleus | 51.79 | 50.58 |
| AT4G15545.1 | Thale cress | nucleus | 48.51 | 48.37 |
| Bra033493.1-P | Field mustard | nucleus | 47.62 | 47.76 |
| CDY65145 | Canola | nucleus | 47.32 | 47.6 |
| CDY22903 | Canola | nucleus | 47.32 | 47.46 |
| TraesCS2A01G419200.1 | Wheat | cytosol | 40.77 | 41.39 |
| TraesCS4A01G297400.1 | Wheat | cytosol | 36.9 | 37.01 |
| TraesCS3A01G298500.1 | Wheat | nucleus | 40.18 | 36.19 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G254400.1 | EnsemblPlantsGene:TraesCS1A01G254400 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | InterPro:WAT1-related | ncoils:Coil |
| PANTHER:PTHR31218 | PANTHER:PTHR31218:SF43 | SEG:seg | SUPFAM:SSF57997 | MapMan:13.7.2.4 | : |
Description
No Description!
Coordinates
chr1A:+:445915042..445917472
Molecular Weight (calculated)
36929.8 Da
IEP (calculated)
5.193
GRAVY (calculated)
-0.669
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDEGEDAPV AAVAAGFGLP EELAAVLPAD PFEQLDVARK ITSIALASRV GRLEAEAAGL RAQLARRDDA AEDLRERVEQ LESALALATD RLSRAEDDKE
101: TLLKEKATLS NTVNKLNRDV AKLEVFKKTL MQSLQEDDDK PNIPKAKLTE TSNFSPAPSV GDDDSAFTTS KSSQLFETAS SASEESSHAE PDEPRPPRSH
201: VYMPSYNSTP KLTPPGSPPR GYAPLSPPRR HSISIASMNR LDDRSSVFSS SHSAMTSPFD TPSPTGRTRV DGKEFFRQVR NRLSYEQFSA FLANVKELNA
301: HKQTREDTLR KADAIFGPEN SDLYTIFESL ITRTHH
101: TLLKEKATLS NTVNKLNRDV AKLEVFKKTL MQSLQEDDDK PNIPKAKLTE TSNFSPAPSV GDDDSAFTTS KSSQLFETAS SASEESSHAE PDEPRPPRSH
201: VYMPSYNSTP KLTPPGSPPR GYAPLSPPRR HSISIASMNR LDDRSSVFSS SHSAMTSPFD TPSPTGRTRV DGKEFFRQVR NRLSYEQFSA FLANVKELNA
301: HKQTREDTLR KADAIFGPEN SDLYTIFESL ITRTHH
001: MSEIEEEEEE GSASAITGSR SFDLPDELLQ VLPSDPFEQL DVARKITSIA LSTRVSALES ESSDLRELLA EKEKEFEELQ SHVESLEASL SDAFHKLSLA
101: DGEKENLIRE NASLSNTVKR LQRDVSKLEG FRKTLMMSLQ DDDQNAGTTQ IIAKPTPNDD DTPFQPSRHS SIQSQQASEA IEPAATDNEN DAPKPSLSAS
201: LPLVSQTTTP RLTPPGSPPI LSASGTPKTT SRPISPRRHS VSFATTRGMF DDTRSSISIS EPGSQTARTR VDGKEFFRQV RSRLSYEQFG AFLGNVKDLN
301: AHKQTREETL RKAEEIFGGD NRDLYVIFEG LITRNAH
101: DGEKENLIRE NASLSNTVKR LQRDVSKLEG FRKTLMMSLQ DDDQNAGTTQ IIAKPTPNDD DTPFQPSRHS SIQSQQASEA IEPAATDNEN DAPKPSLSAS
201: LPLVSQTTTP RLTPPGSPPI LSASGTPKTT SRPISPRRHS VSFATTRGMF DDTRSSISIS EPGSQTARTR VDGKEFFRQV RSRLSYEQFG AFLGNVKDLN
301: AHKQTREETL RKAEEIFGGD NRDLYVIFEG LITRNAH
Arabidopsis Description
Uncharacterized protein At4g15545 [Source:UniProtKB/Swiss-Prot;Acc:Q93W28]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.