CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96349
KRH30315
KRH38033
KRH68083
KRH71803
KRH71804
KRH75261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15545.1	KRH30315	AT2G44950.1	21798944
AT4G15545.1	KRH75261	AT2G44950.1	21798944
AT4G15545.1	KRG96349	AT3G58560.1	21798944
AT4G15545.1	KRH38033	AT3G58560.1	21798944
AT4G15545.1	KRH68083	AT3G58560.1	21798944
AT4G15545.1	KRH71803	AT3G58560.1	21798944
AT4G15545.1	KRH71804	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02166	Soybean	nucleus	87.5	88.01
KRH11308	Soybean	nucleus	66.57	68.98
VIT_05s0020g02240.t01	Wine grape	nucleus	63.08	65.36
Solyc01g080510.2.1	Tomato	nucleus	61.05	63.83
PGSC0003DMT400081752	Potato	nucleus	60.76	63.33
CDY65145	Canola	nucleus	58.43	60.18
Bra033493.1-P	Field mustard	nucleus	58.43	60.0
Os05t0406000-01	Rice	plasma membrane	30.23	59.77
CDY22903	Canola	nucleus	57.85	59.4
AT4G15545.1	Thale cress	nucleus	57.27	58.46
GSMUA_Achr11P...	Banana	cytosol	51.45	53.15
TraesCS1B01G263900.1	Wheat	cytosol	51.16	52.38
TraesCS1D01G253800.1	Wheat	cytosol	50.87	52.08
TraesCS1A01G254400.1	Wheat	cytosol	50.58	51.79
Zm00001d010314_P001	Maize	nucleus	50.29	51.34
Zm00001d038155_P001	Maize	nucleus	50.58	51.03
KXG21969	Sorghum	cytosol	50.29	44.13
KRH13038	Soybean	nucleus	40.99	41.59
KRH44865	Soybean	nucleus	40.41	41.0

Protein Annotations

EntrezGene:100818464	MapMan:13.7.2.4	EMBL:ACUP02004720	ncoils:Coil	EnsemblPlantsGene:GLYMA_07G253300	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	UniProt:I1KN54	EnsemblPlants:KRH50950
ProteinID:KRH50950	ProteinID:KRH50950.1	PANTHER:PTHR31218	PANTHER:PTHR31218:SF43	UniParc:UPI00023C6349	InterPro:WAT1-related
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:43047875..43051298

Molecular Weight (calculated)

37321.3 Da

IEP (calculated)

5.103

GRAVY (calculated)

-0.560

Length

344 amino acids

Sequence
(BLAST)

001: MAGESGGSAT NLNFDLPEEV VQVLPSDPFQ QLDVARKITS IALSTRVNTL ESDLSSLRAQ IADKDNLIAD LQSQLDSLDA SLSQIAATLF QTEQDKESLL
101: QENASLSDTV KKLNRDVSKL EVFRKTLMQS LQEDDDNSGG TPDTVAKIQS QASLTSTSQI GDNEASLPPA ISSSTGNSFA DDQESDAIRP RVSQNLLLAS
201: QGSTPRITPP GSPPILSASV SPTRTSKPVS PRRHSISFST TRGMHDDRSS VFSSMSLTHG SISSSDAGTG SQTGRTRVDG KEFFRQVRNR LSYEQFGAFL
301: ANVKELNSHK QTKEETLRKA DKIFGPENKD LYTIFEGLIN RNVH

Best Arabidopsis Sequence Match ( AT4G15545.1 )
(BLAST)

001: MSEIEEEEEE GSASAITGSR SFDLPDELLQ VLPSDPFEQL DVARKITSIA LSTRVSALES ESSDLRELLA EKEKEFEELQ SHVESLEASL SDAFHKLSLA
101: DGEKENLIRE NASLSNTVKR LQRDVSKLEG FRKTLMMSLQ DDDQNAGTTQ IIAKPTPNDD DTPFQPSRHS SIQSQQASEA IEPAATDNEN DAPKPSLSAS
201: LPLVSQTTTP RLTPPGSPPI LSASGTPKTT SRPISPRRHS VSFATTRGMF DDTRSSISIS EPGSQTARTR VDGKEFFRQV RSRLSYEQFG AFLGNVKDLN
301: AHKQTREETL RKAEEIFGGD NRDLYVIFEG LITRNAH

Arabidopsis Description

Uncharacterized protein At4g15545 [Source:UniProtKB/Swiss-Prot;Acc:Q93W28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.