Factsheet for TraesCS1B01G263900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G137900.1
TraesCS1B01G153300.2
TraesCS1D01G134400.1
TraesCS3A01G369300.2
TraesCS3B01G401200.2
TraesCS3D01G362300.2
TraesCS6A01G251200.2
TraesCS6B01G274100.2
TraesCS6D01G233000.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15545.1	TraesCS3A01G369300.2	AT2G44950.1	21798944
AT4G15545.1	TraesCS3B01G401200.2	AT2G44950.1	21798944
AT4G15545.1	TraesCS3D01G362300.2	AT2G44950.1	21798944
AT4G15545.1	TraesCS6A01G251200.2	AT2G44950.1	21798944
AT4G15545.1	TraesCS6B01G274100.2	AT2G44950.1	21798944
AT4G15545.1	TraesCS6D01G233000.5	AT2G44950.1	21798944
AT4G15545.1	TraesCS1A01G137900.1	AT3G58560.1	21798944
AT4G15545.1	TraesCS1B01G153300.2	AT3G58560.1	21798944
AT4G15545.1	TraesCS1D01G134400.1	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G253800.1	Wheat	cytosol	98.21	98.21
TraesCS1A01G254400.1	Wheat	cytosol	97.62	97.62
Zm00001d010314_P001	Maize	nucleus	66.37	66.17
Os05t0406000-01	Rice	plasma membrane	34.23	66.09
Zm00001d038155_P001	Maize	nucleus	63.69	62.76
KXG21969	Sorghum	cytosol	66.96	57.4
PGSC0003DMT400081752	Potato	nucleus	52.08	53.03
KRH02166	Soybean	nucleus	53.57	52.63
Solyc01g080510.2.1	Tomato	nucleus	51.19	52.28
VIT_05s0020g02240.t01	Wine grape	nucleus	51.49	52.11
GSMUA_Achr11P...	Banana	cytosol	50.89	51.35
KRH11308	Soybean	nucleus	50.6	51.2
KRH50950	Soybean	nucleus	52.38	51.16
AT4G15545.1	Thale cress	nucleus	48.21	48.07
Bra033493.1-P	Field mustard	nucleus	47.32	47.46
CDY65145	Canola	nucleus	47.02	47.31
CDY22903	Canola	nucleus	47.02	47.16
TraesCS2B01G437900.2	Wheat	cytosol	40.77	41.02
TraesCS4B01G016300.1	Wheat	cytosol	39.29	38.6
TraesCS3B01G338000.1	Wheat	nucleus	40.48	36.27

Protein Annotations

EnsemblPlants:TraesCS1B01G263900.1	EnsemblPlantsGene:TraesCS1B01G263900	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	InterPro:WAT1-related	ncoils:Coil
PANTHER:PTHR31218	PANTHER:PTHR31218:SF43	SEG:seg	SUPFAM:SSF57997	MapMan:13.7.2.4	:

Description

No Description!

Coordinates

chr1B:-:464481470..464484006

Molecular Weight (calculated)

36787.7 Da

IEP (calculated)

4.973

GRAVY (calculated)

-0.631

Length

336 amino acids

Sequence
(BLAST)

001: MSDEGEDAPV AAVAAGFGLP EELAAVLPAD PFEQLDVARK ITSIALASRV GRLEAEAAGL RAQLAQRDDA AEDLRERVEQ LESALALATD RLSRAEDDKE
101: TLLKEKATLS NTVNKLNRDV AKLEVFKKTL MQSLQEDDDK PNIPKAKLTE ASSFSPAPSL GDDDSAFPTS NSSQLFETAS SASEESSHAE PDVPRPPRSH
201: VYMPSYNSTP KLTPPGSPPR GYAPLSPPRR HSISIASMNR LDDRSSVFSS SNSAMTSPFD TPSPTGRTRV DGKEFFRQVR NRLSYEQFSA FLANVKELNA
301: HKQTREDTLR KADAIFGPEN SDLYTIFESL ITRTHH

Best Arabidopsis Sequence Match ( AT4G15545.1 )
(BLAST)

001: MSEIEEEEEE GSASAITGSR SFDLPDELLQ VLPSDPFEQL DVARKITSIA LSTRVSALES ESSDLRELLA EKEKEFEELQ SHVESLEASL SDAFHKLSLA
101: DGEKENLIRE NASLSNTVKR LQRDVSKLEG FRKTLMMSLQ DDDQNAGTTQ IIAKPTPNDD DTPFQPSRHS SIQSQQASEA IEPAATDNEN DAPKPSLSAS
201: LPLVSQTTTP RLTPPGSPPI LSASGTPKTT SRPISPRRHS VSFATTRGMF DDTRSSISIS EPGSQTARTR VDGKEFFRQV RSRLSYEQFG AFLGNVKDLN
301: AHKQTREETL RKAEEIFGGD NRDLYVIFEG LITRNAH

Arabidopsis Description

Uncharacterized protein At4g15545 [Source:UniProtKB/Swiss-Prot;Acc:Q93W28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.