Factsheet for TraesCS3B01G338000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G074720.1	Barley	cytosol	80.0	92.59
TraesCS3A01G298500.1	Wheat	nucleus	91.73	92.23
TraesCS3D01G303400.1	Wheat	nucleus	88.8	89.04
Os01t0768300-00	Rice	cytosol	66.93	72.33
OQU87614	Sorghum	cytosol	66.67	71.63
Zm00001d043333_P001	Maize	mitochondrion	59.47	62.82
TraesCS4B01G016300.1	Wheat	cytosol	49.33	54.09
AT1G56080.1	Thale cress	nucleus	42.67	51.61
GSMUA_Achr9P26210_001	Banana	cytosol	46.13	50.44
KRH13038	Soybean	nucleus	44.8	49.56
VIT_19s0027g01640.t01	Wine grape	nucleus	45.07	49.42
Solyc10g005580.2.1	Tomato	nucleus	45.07	49.27
KRH44865	Soybean	nucleus	44.53	49.26
CDY66795	Canola	cytosol	31.47	48.76
PGSC0003DMT400029232	Potato	nucleus	44.53	48.69
AT1G16520.1	Thale cress	cytosol	41.87	48.31
CDY54262	Canola	nucleus	39.2	48.2
Bra040781.1-P	Field mustard	nucleus	38.67	47.39
CDY63493	Canola	nucleus	38.67	47.39
PGSC0003DMT400056890	Potato	nucleus	42.93	47.08
CDY40055	Canola	cytosol	41.07	46.53
Bra026043.1-P	Field mustard	cytosol	40.8	46.22
TraesCS2B01G437900.2	Wheat	cytosol	40.53	45.51
Solyc07g066520.2.1	Tomato	nucleus	42.67	44.32
TraesCS1B01G263900.1	Wheat	cytosol	36.27	40.48

Protein Annotations

EnsemblPlants:TraesCS3B01G338000.1	EnsemblPlantsGene:TraesCS3B01G338000	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	InterPro:WAT1-related	ncoils:Coil
PANTHER:PTHR31218	PANTHER:PTHR31218:SF76	SEG:seg	MapMan:13.7.2.4	:	:

Description

No Description!

Coordinates

chr3B:-:544557225..544559204

Molecular Weight (calculated)

40277.1 Da

IEP (calculated)

10.092

GRAVY (calculated)

-0.583

Length

375 amino acids

Sequence
(BLAST)

001: MTQTPGAHAA PAAPAPPPPA EGAGLSEAIV AALPPDPYDQ LEVARKITAV AVAARASRLE HEAARLRQKL ADKDRLAAEL ADRAGALDQA LHDADARLRV
101: VLEDNAKLVK ERDSLVQTSR KLARDLAKLE TFKRHLMQSL GDDNSSSQET VDIRTCEQSV AKASSWRDDA SASNNPAPAS TTRADGSSEA ESVNQEVARP
201: FEQKLTITHM TPRLMADPSP KQRSSSAAST RRYSTAVSPK LASRASSPRR YSTAVSPKLS SGSSGAGTAS SPRLEGHMAM SAWLPSSKMS SAANSPPRGH
301: SVSGRTTRID GKEFFRQARS RLSYEQFAAF LANIKELNAH RQSQEETLEK ADQIFGAENK DLLLSFQGLL SRSLT

Best Arabidopsis Sequence Match ( AT1G56080.1 )
(BLAST)

001: MSQSGGDFNL SDEILAVIPT DPYDQLDLAR KITSMAIASR VSNLESQVSG LRQKLLEKDR LVHELEDRVS SFERLYHEAD SSLKNVVDEN MKLTQERDSL
101: AITAKKLGRD YAKLEAFKRQ LMQSLNDDNP SQTETADVRM VPRGKDENSN GSYSNNEGLS EARQRQSMTP QFSPAFTPSG TPKILSTAAS PRSYSAASSP
201: KLFSGAASPT SSHYDIRMWS STSQQSSVAN SPPRSHSVSA RHPRIDGKEF FRQARSRLSY EQFSAFLANI KELNARKQGR EETLQKAEEI FGKENNDLYI
301: SFKGLLTSGR

Arabidopsis Description

At1g56080 [Source:UniProtKB/TrEMBL;Acc:Q0IGM5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.