Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY54262 | Canola | nucleus | 76.77 | 78.03 |
| Bra040781.1-P | Field mustard | nucleus | 74.52 | 75.49 |
| CDY63493 | Canola | nucleus | 74.52 | 75.49 |
| Os03t0659800-01 | Rice | plastid | 26.45 | 62.6 |
| VIT_19s0027g01640.t01 | Wine grape | nucleus | 66.13 | 59.94 |
| KRH44865 | Soybean | nucleus | 63.23 | 57.82 |
| KRH13038 | Soybean | nucleus | 63.23 | 57.82 |
| AT1G16520.1 | Thale cress | cytosol | 60.32 | 57.54 |
| PGSC0003DMT400029232 | Potato | nucleus | 61.29 | 55.39 |
| Solyc10g005580.2.1 | Tomato | nucleus | 60.32 | 54.52 |
| PGSC0003DMT400056890 | Potato | nucleus | 59.68 | 54.09 |
| Zm00001d029987_P001 | Maize | cytosol | 16.45 | 52.58 |
| Solyc07g066520.2.1 | Tomato | nucleus | 60.32 | 51.8 |
| GSMUA_Achr9P26210_001 | Banana | cytosol | 54.84 | 49.56 |
| Os04t0616000-01 | Rice | nucleus | 49.68 | 49.36 |
| TraesCS2D01G416200.1 | Wheat | cytosol | 52.58 | 49.24 |
| TraesCS2A01G419200.1 | Wheat | cytosol | 52.58 | 49.24 |
| EER91123 | Sorghum | cytosol | 54.84 | 49.13 |
| TraesCS2B01G437900.2 | Wheat | cytosol | 52.58 | 48.8 |
| Zm00001d033465_P001 | Maize | cytosol | 53.23 | 48.25 |
| Zm00001d026302_P002 | Maize | nucleus | 51.29 | 48.04 |
| Zm00001d002315_P003 | Maize | cytosol | 51.29 | 47.89 |
| Zm00001d013624_P001 | Maize | cytosol | 52.9 | 47.81 |
| EES12856 | Sorghum | nucleus | 51.94 | 47.77 |
| HORVU3Hr1G074720.1 | Barley | cytosol | 49.68 | 47.53 |
| Zm00001d033261_P001 | Maize | cytosol | 11.94 | 46.84 |
| Os01t0768300-00 | Rice | cytosol | 51.94 | 46.4 |
| TraesCS4D01G014700.1 | Wheat | cytosol | 50.97 | 46.33 |
| TraesCS4B01G016300.1 | Wheat | cytosol | 50.97 | 46.2 |
| TraesCS4A01G297400.1 | Wheat | cytosol | 49.68 | 45.97 |
| OQU87614 | Sorghum | cytosol | 51.61 | 45.85 |
| GSMUA_Achr6P20060_001 | Banana | nucleus | 49.35 | 45.4 |
| TraesCS3D01G303400.1 | Wheat | nucleus | 52.9 | 43.85 |
| TraesCS3A01G298500.1 | Wheat | nucleus | 51.94 | 43.16 |
| TraesCS3B01G338000.1 | Wheat | nucleus | 51.61 | 42.67 |
| AT4G15545.1 | Thale cress | nucleus | 40.32 | 37.09 |
| Zm00001d043760_P001 | Maize | cytosol | 12.58 | 36.11 |
| Zm00001d043333_P001 | Maize | mitochondrion | 40.65 | 35.49 |
| Zm00001d019442_P001 | Maize | cytosol | 15.16 | 29.19 |
| HORVU2Hr1G098580.1 | Barley | cytosol | 34.19 | 28.57 |
| Zm00001d003628_P001 | Maize | plastid | 12.58 | 20.74 |
| Zm00001d038230_P001 | Maize | cytosol | 15.48 | 20.0 |
Protein Annotations
| MapMan:13.7.2.4 | EntrezGene:842059 | ProteinID:AEE33339.1 | ArrayExpress:AT1G56080 | EnsemblPlantsGene:AT1G56080 | RefSeq:AT1G56080 |
| TAIR:AT1G56080 | RefSeq:AT1G56080-TAIR-G | EnsemblPlants:AT1G56080.1 | TAIR:AT1G56080.1 | Unigene:At.11793 | EMBL:BT028895 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 |
| RefSeq:NP_176004.2 | PO:PO:0000037 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 |
| PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR31218 | PANTHER:PTHR31218:SF134 | UniProt:Q0IGM5 | UniParc:UPI000034F4B2 |
| InterPro:WAT1-related | SEG:seg | : | : | : | : |
Description
At1g56080 [Source:UniProtKB/TrEMBL;Acc:Q0IGM5]
Coordinates
chr1:-:20974161..20976372
Molecular Weight (calculated)
34599.3 Da
IEP (calculated)
9.156
GRAVY (calculated)
-0.768
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQSGGDFNL SDEILAVIPT DPYDQLDLAR KITSMAIASR VSNLESQVSG LRQKLLEKDR LVHELEDRVS SFERLYHEAD SSLKNVVDEN MKLTQERDSL
101: AITAKKLGRD YAKLEAFKRQ LMQSLNDDNP SQTETADVRM VPRGKDENSN GSYSNNEGLS EARQRQSMTP QFSPAFTPSG TPKILSTAAS PRSYSAASSP
201: KLFSGAASPT SSHYDIRMWS STSQQSSVAN SPPRSHSVSA RHPRIDGKEF FRQARSRLSY EQFSAFLANI KELNARKQGR EETLQKAEEI FGKENNDLYI
301: SFKGLLTSGR
101: AITAKKLGRD YAKLEAFKRQ LMQSLNDDNP SQTETADVRM VPRGKDENSN GSYSNNEGLS EARQRQSMTP QFSPAFTPSG TPKILSTAAS PRSYSAASSP
201: KLFSGAASPT SSHYDIRMWS STSQQSSVAN SPPRSHSVSA RHPRIDGKEF FRQARSRLSY EQFSAFLANI KELNARKQGR EETLQKAEEI FGKENNDLYI
301: SFKGLLTSGR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.