Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d033261_P001 | Maize | cytosol | 22.05 | 92.41 |
| Zm00001d029987_P001 | Maize | cytosol | 25.98 | 88.66 |
| EES12856 | Sorghum | nucleus | 87.01 | 85.46 |
| Zm00001d002315_P003 | Maize | cytosol | 83.08 | 82.83 |
| Os04t0616000-01 | Rice | nucleus | 75.23 | 79.81 |
| TraesCS2A01G419200.1 | Wheat | cytosol | 79.46 | 79.46 |
| TraesCS2D01G416200.1 | Wheat | cytosol | 79.15 | 79.15 |
| TraesCS2B01G437900.2 | Wheat | cytosol | 79.15 | 78.44 |
| KRH13038 | Soybean | nucleus | 54.98 | 53.69 |
| KRH44865 | Soybean | nucleus | 53.78 | 52.51 |
| GSMUA_Achr6P20060_001 | Banana | nucleus | 52.87 | 51.93 |
| CDY54262 | Canola | nucleus | 47.43 | 51.48 |
| AT1G56080.1 | Thale cress | nucleus | 48.04 | 51.29 |
| CDY63493 | Canola | nucleus | 47.13 | 50.98 |
| Bra040781.1-P | Field mustard | nucleus | 47.13 | 50.98 |
| PGSC0003DMT400029232 | Potato | nucleus | 52.27 | 50.44 |
| CDY66795 | Canola | cytosol | 36.86 | 50.41 |
| VIT_19s0027g01640.t01 | Wine grape | nucleus | 51.66 | 50.0 |
| Solyc10g005580.2.1 | Tomato | nucleus | 51.06 | 49.27 |
| CDY40055 | Canola | cytosol | 49.24 | 49.24 |
| AT1G16520.1 | Thale cress | cytosol | 48.34 | 49.23 |
| Bra026043.1-P | Field mustard | cytosol | 48.94 | 48.94 |
| PGSC0003DMT400056890 | Potato | nucleus | 50.45 | 48.83 |
| Zm00001d033465_P001 | Maize | cytosol | 49.85 | 48.25 |
| Zm00001d013624_P001 | Maize | cytosol | 49.24 | 47.52 |
| Solyc07g066520.2.1 | Tomato | nucleus | 51.36 | 47.09 |
| HORVU2Hr1G098580.1 | Barley | cytosol | 48.34 | 43.13 |
| Zm00001d038155_P001 | Maize | nucleus | 39.58 | 38.42 |
| Zm00001d043333_P001 | Maize | mitochondrion | 40.79 | 38.03 |
| Zm00001d010314_P001 | Maize | nucleus | 38.07 | 37.39 |
| Zm00001d043760_P001 | Maize | cytosol | 11.48 | 35.19 |
| Zm00001d019442_P001 | Maize | cytosol | 15.11 | 31.06 |
| Zm00001d003628_P001 | Maize | plastid | 12.99 | 22.87 |
| Zm00001d038230_P001 | Maize | cytosol | 15.71 | 21.67 |
Protein Annotations
| EnsemblPlants:Zm00001d026302_P002 | EnsemblPlants:Zm00001d026302_T002 | EnsemblPlantsGene:Zm00001d026302 | EntrezGene:103642055 | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 |
| GO:GO:0055085 | InterPro:WAT1-related | ncoils:Coil | PANTHER:PTHR31218 | PANTHER:PTHR31218:SF32 | ProteinID:AQK46146.1 |
| ProteinID:AQK46147.1 | SEG:seg | UniParc:UPI000221B32B | UniProt:K7TNL4 | MapMan:13.7.2.4 | : |
Description
OSJNBa0008M17.14 protein; protein
Coordinates
chr10:-:143209576..143212715
Molecular Weight (calculated)
36448.4 Da
IEP (calculated)
7.712
GRAVY (calculated)
-0.658
Length
331 amino acids
Sequence
(BLAST)
(BLAST)
001: MARNETAAAA APGVDFHLPD EILAVIPTDP YEQLDVARKI TSMAIASRVS RLEADAARLR RDLADRDRAE ADLRACLADS DARLATALDE NAKLAKERDS
101: LAATVKKLTR NLAKLEAFKK QLMKSLSEDN LLQLSETSQD HNAEDLTARV PFWKDEVSSS NTSSDASSRS TITESVHDGG YQFSITPYMP PKLTPGSTTM
201: ISSSSGSPRA YSTGPPSPKF LSGPTSPAKA RSEGQLAFSS WQGSSSHQYS APTSPPQRRS FTGRPRIDGK EFFRQARTRL SYEQFGAFLA NIKEFNAQKQ
301: SREDTLSKAE EIFGTEHNDL YISFQNMLNR N
101: LAATVKKLTR NLAKLEAFKK QLMKSLSEDN LLQLSETSQD HNAEDLTARV PFWKDEVSSS NTSSDASSRS TITESVHDGG YQFSITPYMP PKLTPGSTTM
201: ISSSSGSPRA YSTGPPSPKF LSGPTSPAKA RSEGQLAFSS WQGSSSHQYS APTSPPQRRS FTGRPRIDGK EFFRQARTRL SYEQFGAFLA NIKEFNAQKQ
301: SREDTLSKAE EIFGTEHNDL YISFQNMLNR N
001: MSQSGGDFNL SDEILAVIPT DPYDQLDLAR KITSMAIASR VSNLESQVSG LRQKLLEKDR LVHELEDRVS SFERLYHEAD SSLKNVVDEN MKLTQERDSL
101: AITAKKLGRD YAKLEAFKRQ LMQSLNDDNP SQTETADVRM VPRGKDENSN GSYSNNEGLS EARQRQSMTP QFSPAFTPSG TPKILSTAAS PRSYSAASSP
201: KLFSGAASPT SSHYDIRMWS STSQQSSVAN SPPRSHSVSA RHPRIDGKEF FRQARSRLSY EQFSAFLANI KELNARKQGR EETLQKAEEI FGKENNDLYI
301: SFKGLLTSGR
101: AITAKKLGRD YAKLEAFKRQ LMQSLNDDNP SQTETADVRM VPRGKDENSN GSYSNNEGLS EARQRQSMTP QFSPAFTPSG TPKILSTAAS PRSYSAASSP
201: KLFSGAASPT SSHYDIRMWS STSQQSSVAN SPPRSHSVSA RHPRIDGKEF FRQARSRLSY EQFSAFLANI KELNARKQGR EETLQKAEEI FGKENNDLYI
301: SFKGLLTSGR
Arabidopsis Description
At1g56080 [Source:UniProtKB/TrEMBL;Acc:Q0IGM5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.