Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029232 | Potato | nucleus | 95.92 | 95.92 |
| Os03t0659800-01 | Rice | plastid | 27.7 | 72.52 |
| Solyc07g066520.2.1 | Tomato | nucleus | 73.76 | 70.08 |
| VIT_19s0027g01640.t01 | Wine grape | nucleus | 67.35 | 67.54 |
| KRH44865 | Soybean | nucleus | 64.72 | 65.49 |
| CDY66795 | Canola | cytosol | 45.77 | 64.88 |
| KRH13038 | Soybean | nucleus | 63.85 | 64.6 |
| CDY40055 | Canola | cytosol | 60.64 | 62.84 |
| Bra026043.1-P | Field mustard | cytosol | 60.35 | 62.54 |
| AT1G16520.1 | Thale cress | cytosol | 58.89 | 62.15 |
| AT1G56080.1 | Thale cress | nucleus | 54.52 | 60.32 |
| Bra040781.1-P | Field mustard | nucleus | 52.19 | 58.5 |
| CDY63493 | Canola | nucleus | 52.19 | 58.5 |
| CDY54262 | Canola | nucleus | 51.9 | 58.36 |
| Zm00001d033465_P001 | Maize | cytosol | 56.56 | 56.73 |
| EER91123 | Sorghum | cytosol | 56.56 | 56.07 |
| GSMUA_Achr6P20060_001 | Banana | nucleus | 54.52 | 55.49 |
| Zm00001d013624_P001 | Maize | cytosol | 55.39 | 55.39 |
| TraesCS4D01G014700.1 | Wheat | cytosol | 54.81 | 55.13 |
| TraesCS4B01G016300.1 | Wheat | cytosol | 54.81 | 54.97 |
| TraesCS4A01G297400.1 | Wheat | cytosol | 53.64 | 54.93 |
| GSMUA_Achr9P26210_001 | Banana | cytosol | 54.52 | 54.52 |
| Os04t0616000-01 | Rice | nucleus | 48.69 | 53.53 |
| Zm00001d029987_P001 | Maize | cytosol | 14.87 | 52.58 |
| HORVU3Hr1G074720.1 | Barley | cytosol | 48.69 | 51.54 |
| Zm00001d026302_P002 | Maize | nucleus | 49.27 | 51.06 |
| EES12856 | Sorghum | nucleus | 50.15 | 51.04 |
| TraesCS2D01G416200.1 | Wheat | cytosol | 48.98 | 50.76 |
| TraesCS2A01G419200.1 | Wheat | cytosol | 48.98 | 50.76 |
| Zm00001d002315_P003 | Maize | cytosol | 48.69 | 50.3 |
| TraesCS2B01G437900.2 | Wheat | cytosol | 48.98 | 50.3 |
| Os01t0768300-00 | Rice | cytosol | 49.27 | 48.7 |
| OQU87614 | Sorghum | cytosol | 48.98 | 48.14 |
| Zm00001d033261_P001 | Maize | cytosol | 10.79 | 46.84 |
| TraesCS3D01G303400.1 | Wheat | nucleus | 49.27 | 45.19 |
| TraesCS3B01G338000.1 | Wheat | nucleus | 49.27 | 45.07 |
| TraesCS3A01G298500.1 | Wheat | nucleus | 48.4 | 44.5 |
| Zm00001d043333_P001 | Maize | mitochondrion | 41.69 | 40.28 |
| Zm00001d043760_P001 | Maize | cytosol | 11.66 | 37.04 |
| Solyc01g080510.2.1 | Tomato | nucleus | 34.4 | 35.87 |
| Zm00001d019442_P001 | Maize | cytosol | 13.99 | 29.81 |
| HORVU2Hr1G098580.1 | Barley | cytosol | 31.78 | 29.38 |
| Zm00001d003628_P001 | Maize | plastid | 13.41 | 24.47 |
| Zm00001d038230_P001 | Maize | cytosol | 14.58 | 20.83 |
Protein Annotations
| EnsemblPlants:Solyc10g005580.2.1 | EnsemblPlantsGene:Solyc10g005580.2 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005623 |
| GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 |
| GO:GO:0055085 | InterPro:WAT1-related | ncoils:Coil | PANTHER:PTHR31218 | PANTHER:PTHR31218:SF134 | SEG:seg |
| UniParc:UPI000276C76E | UniProt:K4CX90 | MapMan:13.7.2.4 | : | : | : |
Description
No Description!
Coordinates
chr10:-:468296..473106
Molecular Weight (calculated)
38364.8 Da
IEP (calculated)
8.593
GRAVY (calculated)
-0.792
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLDSSSDSS RSPGPDFHLS DEILSVIPTD PYDQLDLARK ITSMAIASRV TKLESETGRL HQKLNDKDRV IVELQDKVSQ LEKACHENEL RLQFTCEDNM
101: KLTKERDSLA MTVKKMARDL AKLETFKRQL VQSLSDDNSS PAETVDIGTY DQSTHKAYSL KEEVNSYAVH HSSNGSMDST VINDDASKRA LQSYSMSPYI
201: TPRFTPTGTP KIISTSVSPR RYSVAGSPQR MSGANSPTNS QYEGRGSMSS FFPSSQQSSA ANSPPKSRPL PGQTPRIDGK EFFRQARSRL SYEQFSAFLT
301: NIKELNAQKQ SREETLKKSE EIFGTENKDL YLSFQGLLNR SAR
101: KLTKERDSLA MTVKKMARDL AKLETFKRQL VQSLSDDNSS PAETVDIGTY DQSTHKAYSL KEEVNSYAVH HSSNGSMDST VINDDASKRA LQSYSMSPYI
201: TPRFTPTGTP KIISTSVSPR RYSVAGSPQR MSGANSPTNS QYEGRGSMSS FFPSSQQSSA ANSPPKSRPL PGQTPRIDGK EFFRQARSRL SYEQFSAFLT
301: NIKELNAQKQ SREETLKKSE EIFGTENKDL YLSFQGLLNR SAR
001: MGDDQLDFEL PEEVLSVIPM DPFEQLDLAR KITSMAIASR VSNLDSEVVE LRQKLLGKES VVRELEEKAS RLERDCREAD SRLKVVLEDN MNLTKEKDSL
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR
Arabidopsis Description
At1g16520 [Source:UniProtKB/TrEMBL;Acc:Q9SA50]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.