Factsheet for GSMUA_Achr6P20060_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0616000-01	Rice	nucleus	51.63	55.77
Solyc10g005580.2.1	Tomato	nucleus	55.49	54.52
VIT_19s0027g01640.t01	Wine grape	nucleus	55.19	54.39
TraesCS2D01G416200.1	Wheat	cytosol	52.82	53.78
PGSC0003DMT400029232	Potato	nucleus	54.6	53.64
TraesCS2B01G437900.2	Wheat	cytosol	53.12	53.59
TraesCS2A01G419200.1	Wheat	cytosol	52.52	53.47
EES12856	Sorghum	nucleus	53.41	53.41
Zm00001d026302_P002	Maize	nucleus	51.93	52.87
KRH13038	Soybean	nucleus	51.93	51.62
KRH44865	Soybean	nucleus	51.93	51.62
Zm00001d029987_P001	Maize	cytosol	14.84	51.55
PGSC0003DMT400056890	Potato	nucleus	52.23	51.46
AT1G16520.1	Thale cress	cytosol	48.96	50.77
CDY40055	Canola	cytosol	48.96	49.85
Bra026043.1-P	Field mustard	cytosol	48.96	49.85
Zm00001d002315_P003	Maize	cytosol	48.96	49.7
GSMUA_Achr9P26210_001	Banana	cytosol	50.45	49.56
Zm00001d033261_P001	Maize	cytosol	11.57	49.37
AT1G56080.1	Thale cress	nucleus	45.4	49.35
CDY66795	Canola	cytosol	35.01	48.76
Solyc07g066520.2.1	Tomato	nucleus	52.23	48.75
CDY54262	Canola	nucleus	43.03	47.54
CDY63493	Canola	nucleus	42.73	47.06
Bra040781.1-P	Field mustard	nucleus	42.73	47.06
GSMUA_Achr11P...	Banana	cytosol	35.91	36.34
HORVU2Hr1G098580.1	Barley	cytosol	32.64	29.65

Protein Annotations

MapMan:13.7.2.4	ncoils:Coil	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSMUA_Achr6G20060_001
EnsemblPlants:GSMUA_Achr6P20060_001	EnsemblPlants:GSMUA_Achr6T20060_001	UniProt:M0T8K4	PANTHER:PTHR31218	PANTHER:PTHR31218:SF134	UniParc:UPI0002964830
InterPro:WAT1-related	SEG:seg	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G20060_001]

Coordinates

chr6:+:14459986..14463467

Molecular Weight (calculated)

37791.3 Da

IEP (calculated)

6.434

GRAVY (calculated)

-0.618

Length

337 amino acids

Sequence
(BLAST)

001: MASDGGDFDL PDEILAVIPV DPYDQLDLAR RITSMAISSR VSRLGAEAGL LRQKIVDRDR VIDELQDKVD HLDRLVQESH ARLRATLEEN ATLSEERVTL
101: DMTSKKLARY LSKLETFKRH LVKSLSDDNL SQLSEAVDNE MYKQPIARIS SWRDDDSISH VGSDVANGPA ETGDSTQDGS KHVMHQFSIT PYITPRPTPS
201: STPKFFLADD SPRGFSTTES SPRVVSEATS PSKPQLEGRG SMSHWYASSQ QSSASCSPPH RQSMPGYTPR IIGKEIFRQA RSRLSYEQFA AFLTIVKEFN
301: AQRQSRKETL AKAEEIFGTE HKDLYISFQS LLNRTLP

Best Arabidopsis Sequence Match ( AT1G16520.1 )
(BLAST)

001: MGDDQLDFEL PEEVLSVIPM DPFEQLDLAR KITSMAIASR VSNLDSEVVE LRQKLLGKES VVRELEEKAS RLERDCREAD SRLKVVLEDN MNLTKEKDSL
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR

Arabidopsis Description

At1g16520 [Source:UniProtKB/TrEMBL;Acc:Q9SA50]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.