Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os03t0659800-01 | Rice | plastid | 28.07 | 73.28 |
| KRH44865 | Soybean | nucleus | 68.71 | 69.32 |
| KRH13038 | Soybean | nucleus | 68.13 | 68.73 |
| PGSC0003DMT400029232 | Potato | nucleus | 67.84 | 67.64 |
| Solyc10g005580.2.1 | Tomato | nucleus | 67.54 | 67.35 |
| AT1G56080.1 | Thale cress | nucleus | 59.94 | 66.13 |
| PGSC0003DMT400056890 | Potato | nucleus | 65.79 | 65.79 |
| AT1G16520.1 | Thale cress | cytosol | 61.7 | 64.92 |
| CDY66795 | Canola | cytosol | 45.91 | 64.88 |
| Bra026043.1-P | Field mustard | cytosol | 60.82 | 62.84 |
| CDY54262 | Canola | nucleus | 55.85 | 62.62 |
| CDY40055 | Canola | cytosol | 59.65 | 61.63 |
| Solyc07g066520.2.1 | Tomato | nucleus | 64.91 | 61.5 |
| Bra040781.1-P | Field mustard | nucleus | 54.39 | 60.78 |
| CDY63493 | Canola | nucleus | 54.39 | 60.78 |
| EER91123 | Sorghum | cytosol | 57.02 | 56.36 |
| Zm00001d033465_P001 | Maize | cytosol | 55.85 | 55.85 |
| GSMUA_Achr9P26210_001 | Banana | cytosol | 55.85 | 55.69 |
| TraesCS4D01G014700.1 | Wheat | cytosol | 55.26 | 55.43 |
| TraesCS4B01G016300.1 | Wheat | cytosol | 55.26 | 55.26 |
| GSMUA_Achr6P20060_001 | Banana | nucleus | 54.39 | 55.19 |
| Os04t0616000-01 | Rice | nucleus | 50.29 | 55.13 |
| TraesCS4A01G297400.1 | Wheat | cytosol | 53.8 | 54.93 |
| Zm00001d013624_P001 | Maize | cytosol | 54.97 | 54.81 |
| TraesCS2D01G416200.1 | Wheat | cytosol | 52.34 | 54.08 |
| Zm00001d029987_P001 | Maize | cytosol | 15.2 | 53.61 |
| TraesCS2A01G419200.1 | Wheat | cytosol | 51.75 | 53.47 |
| TraesCS2B01G437900.2 | Wheat | cytosol | 51.75 | 52.99 |
| Zm00001d026302_P002 | Maize | nucleus | 50.0 | 51.66 |
| EES12856 | Sorghum | nucleus | 50.29 | 51.04 |
| HORVU3Hr1G074720.1 | Barley | cytosol | 47.95 | 50.62 |
| Zm00001d002315_P003 | Maize | cytosol | 47.95 | 49.4 |
| Zm00001d033261_P001 | Maize | cytosol | 11.4 | 49.37 |
| Os01t0768300-00 | Rice | cytosol | 49.71 | 48.99 |
| OQU87614 | Sorghum | cytosol | 49.71 | 48.71 |
| TraesCS3A01G298500.1 | Wheat | nucleus | 50.0 | 45.84 |
| TraesCS3D01G303400.1 | Wheat | nucleus | 50.0 | 45.72 |
| TraesCS3B01G338000.1 | Wheat | nucleus | 49.42 | 45.07 |
| Zm00001d043333_P001 | Maize | mitochondrion | 40.35 | 38.87 |
| VIT_05s0020g02240.t01 | Wine grape | nucleus | 37.13 | 38.25 |
| Zm00001d043760_P001 | Maize | cytosol | 11.99 | 37.96 |
| Zm00001d019442_P001 | Maize | cytosol | 14.91 | 31.68 |
| HORVU2Hr1G098580.1 | Barley | cytosol | 33.63 | 31.0 |
| Zm00001d003628_P001 | Maize | plastid | 12.87 | 23.4 |
| Zm00001d038230_P001 | Maize | cytosol | 15.79 | 22.5 |
Protein Annotations
| EntrezGene:100261617 | wikigene:100261617 | MapMan:13.7.2.4 | EMBL:AM454958 | ProteinID:CAN74429 | ProteinID:CAN74429.1 |
| ProteinID:CBI21692 | ProteinID:CBI21692.3 | ncoils:Coil | UniProt:D7SWP3 | EMBL:FN595234 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0022857 | GO:GO:0055085 | EntrezGene:LOC100261617 | wikigene:LOC100261617 |
| PANTHER:PTHR31218 | PANTHER:PTHR31218:SF134 | UniParc:UPI0001985BF6 | ArrayExpress:VIT_19s0027g01640 | EnsemblPlantsGene:VIT_19s0027g01640 | EnsemblPlants:VIT_19s0027g01640.t01 |
| InterPro:WAT1-related | RefSeq:XP_002266129 | RefSeq:XP_002266129.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr19:-:21902145..21911542
Molecular Weight (calculated)
38246.6 Da
IEP (calculated)
8.769
GRAVY (calculated)
-0.792
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQNSNYNSG SGPDFNITDD ILAVIPTDPY DQLDLARKIT SMAIASRVSK LESEVGRLRQ MMYEKDRVAF DLEEKVSQLE RAYQESESRL KMVIDENTRL
101: SKERDSLAMT AKKMGRDLAK LETFKRQLMQ SLSDDNSSQT ETVDIGTCDQ SIPKAYPDID DGTNGYVVNQ PLSGFTEYRN STDEASRLAV QRFSVTPYIT
201: PRFTPSGTPK IFSTGGSPRG YSAVASPNKT SGATSPTKSQ YDGRGALSSW YPSSQQSSAA NSPPRARPLP ARTPRIDGKE FFRQARSRLS YEQFSAFLAN
301: IKELNAQKQS REETLRKAEE IFGTDNKDLY LSFQGLLNRN PH
101: SKERDSLAMT AKKMGRDLAK LETFKRQLMQ SLSDDNSSQT ETVDIGTCDQ SIPKAYPDID DGTNGYVVNQ PLSGFTEYRN STDEASRLAV QRFSVTPYIT
201: PRFTPSGTPK IFSTGGSPRG YSAVASPNKT SGATSPTKSQ YDGRGALSSW YPSSQQSSAA NSPPRARPLP ARTPRIDGKE FFRQARSRLS YEQFSAFLAN
301: IKELNAQKQS REETLRKAEE IFGTDNKDLY LSFQGLLNRN PH
001: MGDDQLDFEL PEEVLSVIPM DPFEQLDLAR KITSMAIASR VSNLDSEVVE LRQKLLGKES VVRELEEKAS RLERDCREAD SRLKVVLEDN MNLTKEKDSL
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR
101: AMTVTKLTRD LAKLETFKRQ LIKSLSDESG PQTEPVDIRT CDQPGSYPGK DGRINAHSIK QAYSGSTDTN NPVVEASKYT GNKFSMTSYI SPRLTPTATP
201: KIISTSVSPR GYSAAGSPKR TSGAVSPTKA TLWYPSSQQS SAANSPPRNR TLPARTPRMD GKEFFRQARS RLSYEQFSSF LANIKELNAQ KQTREETLRK
301: ADEIFGEENK DLYLSFQGLL NRNMR
Arabidopsis Description
At1g16520 [Source:UniProtKB/TrEMBL;Acc:Q9SA50]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.