Factsheet for VIT_05s0020g02240.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_08s0007g07020.t01
VIT_15s0021g02140.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15545.1	VIT_15s0021g02140.t01	AT2G44950.1	21798944
AT4G15545.1	VIT_08s0007g07020.t01	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11308	Soybean	nucleus	65.36	65.36
PGSC0003DMT400081752	Potato	nucleus	63.55	63.94
Solyc01g080510.2.1	Tomato	nucleus	63.25	63.83
KRH50950	Soybean	nucleus	65.36	63.08
KRH02166	Soybean	nucleus	63.86	61.99
CDY65145	Canola	nucleus	60.54	60.18
AT4G15545.1	Thale cress	nucleus	60.54	59.64
Os05t0406000-01	Rice	plasma membrane	31.02	59.2
Bra033493.1-P	Field mustard	nucleus	59.64	59.1
CDY22903	Canola	nucleus	59.64	59.1
GSMUA_Achr11P...	Banana	cytosol	56.33	56.16
Zm00001d010314_P001	Maize	nucleus	52.41	51.63
TraesCS1B01G263900.1	Wheat	cytosol	52.11	51.49
TraesCS1A01G254400.1	Wheat	cytosol	51.81	51.19
TraesCS1D01G253800.1	Wheat	cytosol	51.81	51.19
Zm00001d038155_P001	Maize	nucleus	51.51	50.15
KXG21969	Sorghum	cytosol	52.11	44.13
VIT_19s0027g01640.t01	Wine grape	nucleus	38.25	37.13

Protein Annotations

EntrezGene:100252741	wikigene:100252741	MapMan:13.7.2.4	ProteinID:CBI26144	ProteinID:CBI26144.3	ncoils:Coil
UniProt:D7T6M3	EMBL:FN595749	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623
GO:GO:0005886	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857
GO:GO:0055085	EntrezGene:LOC100252741	wikigene:LOC100252741	PANTHER:PTHR31218	PANTHER:PTHR31218:SF43	UniParc:UPI00015C7E9F
ArrayExpress:VIT_05s0020g02240	EnsemblPlantsGene:VIT_05s0020g02240	EnsemblPlants:VIT_05s0020g02240.t01	unigene:Vvi.12575	InterPro:WAT1-related	RefSeq:XP_002278619
RefSeq:XP_002278619.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:-:3961111..3965301

Molecular Weight (calculated)

36353.1 Da

IEP (calculated)

5.174

GRAVY (calculated)

-0.602

Length

332 amino acids

Sequence
(BLAST)

001: MFAKEPGTPS FDLPEEVLEV LPSDPFEQLD VARKITSIAL SARVSALESE ASALRSKLAD KDALVADLHD QIESLDHALS DAADKLFLAE QEKENLLKEN
101: ASLSNTVKKL NRDVSKLESF RKTLMLSLKE DEESSGASPQ VVAKQMAAQS SLSSASMTGE DDATSRYSST RSQYSEIGNS FAEDRETDAS RAGISHGFLL
201: ASQTNTPRLT PPGSPPTLSA SVSPRRHSIS LSTSRGMFDD RPSVPTSQHS SMSSSESGSQ TGRTRVDGKE FFRQVRSRLS YEQFGAFLAN VKELNSHKQT
301: REETLRKADE IFGPDNKDLY AVFEGLITRN VH

Best Arabidopsis Sequence Match ( AT4G15545.1 )
(BLAST)

001: MSEIEEEEEE GSASAITGSR SFDLPDELLQ VLPSDPFEQL DVARKITSIA LSTRVSALES ESSDLRELLA EKEKEFEELQ SHVESLEASL SDAFHKLSLA
101: DGEKENLIRE NASLSNTVKR LQRDVSKLEG FRKTLMMSLQ DDDQNAGTTQ IIAKPTPNDD DTPFQPSRHS SIQSQQASEA IEPAATDNEN DAPKPSLSAS
201: LPLVSQTTTP RLTPPGSPPI LSASGTPKTT SRPISPRRHS VSFATTRGMF DDTRSSISIS EPGSQTARTR VDGKEFFRQV RSRLSYEQFG AFLGNVKDLN
301: AHKQTREETL RKAEEIFGGD NRDLYVIFEG LITRNAH

Arabidopsis Description

Uncharacterized protein At4g15545 [Source:UniProtKB/Swiss-Prot;Acc:Q93W28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.