Factsheet for GSMUA_Achr11P25220_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P01610_001
GSMUA_Achr4P17200_001
GSMUA_Achr4P26960_001
GSMUA_Achr4P26970_001
GSMUA_Achr6P29710_001
GSMUA_Achr9P11040_001
GSMUA_Achr9P25420_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15545.1	GSMUA_Achr1P01610_001	AT2G44950.1	21798944
AT4G15545.1	GSMUA_Achr4P26960_001	AT2G44950.1	21798944
AT4G15545.1	GSMUA_Achr4P26970_001	AT2G44950.1	21798944
AT4G15545.1	GSMUA_Achr4P17200_001	AT3G58560.1	21798944
AT4G15545.1	GSMUA_Achr6P29710_001	AT3G58560.1	21798944
AT4G15545.1	GSMUA_Achr9P11040_001	AT3G58560.1	21798944
AT4G15545.1	GSMUA_Achr9P25420_001	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g02240.t01	Wine grape	nucleus	56.16	56.33
Os05t0406000-01	Rice	plasma membrane	29.43	56.32
KRH02166	Soybean	nucleus	56.16	54.68
PGSC0003DMT400081752	Potato	nucleus	53.45	53.94
KRH11308	Soybean	nucleus	53.75	53.92
Solyc01g080510.2.1	Tomato	nucleus	52.55	53.19
KRH50950	Soybean	nucleus	53.15	51.45
CDY65145	Canola	nucleus	51.35	51.2
TraesCS1A01G254400.1	Wheat	cytosol	51.35	50.89
TraesCS1B01G263900.1	Wheat	cytosol	51.35	50.89
TraesCS1D01G253800.1	Wheat	cytosol	51.35	50.89
CDY22903	Canola	nucleus	51.05	50.75
Bra033493.1-P	Field mustard	nucleus	50.75	50.45
AT4G15545.1	Thale cress	nucleus	51.05	50.45
Zm00001d010314_P001	Maize	nucleus	48.95	48.37
Zm00001d038155_P001	Maize	nucleus	46.85	45.75
KXG21969	Sorghum	cytosol	48.65	41.33
GSMUA_Achr9P26210_001	Banana	cytosol	40.54	39.36
GSMUA_Achr6P20060_001	Banana	nucleus	36.34	35.91

Protein Annotations

EnsemblPlants:GSMUA_Achr11P25220_001	EnsemblPlants:GSMUA_Achr11T25220_001	EnsemblPlantsGene:GSMUA_Achr11G25220_001	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
InterPro:WAT1-related	ncoils:Coil	PANTHER:PTHR31218	PANTHER:PTHR31218:SF43	SEG:seg	SUPFAM:SSF90257
UniParc:UPI000295097B	UniProt:M0RVA2	MapMan:13.7.2.4	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G25220_001]

Coordinates

chr11:-:24420959..24425646

Molecular Weight (calculated)

36292.2 Da

IEP (calculated)

4.899

GRAVY (calculated)

-0.556

Length

333 amino acids

Sequence
(BLAST)

001: MAEASGGGPP DFDLPEAVLS ALPTDPFEQL DVARKITSIA LATRISALES EVSALRLRLS ERDDLVAELR AKLEDLDASL GDVSDRLGRA QDEKETLLNE
101: NATLSNTIKK LNRDVSRLEI FKKTLMQSLQ DEEESPQGVA RVAPKISETA SFSSGSLVED DEVGSSPIKY SQQSRLSETG SSLSEQGGSG EIDGSKEGRV
201: FGSLASLGST PRLTPPGSPP RRHSISVATT RNMFEERSSV FSSLPSSHHN SMSSPFDTGA QAGRTRVDGK EFFRQVRSRL SYEQFSAFLS NVKELNAHKQ
301: TREETLQKAG EIFGPDNKDL YAIFEGLITR NLH

Best Arabidopsis Sequence Match ( AT4G15545.1 )
(BLAST)

001: MSEIEEEEEE GSASAITGSR SFDLPDELLQ VLPSDPFEQL DVARKITSIA LSTRVSALES ESSDLRELLA EKEKEFEELQ SHVESLEASL SDAFHKLSLA
101: DGEKENLIRE NASLSNTVKR LQRDVSKLEG FRKTLMMSLQ DDDQNAGTTQ IIAKPTPNDD DTPFQPSRHS SIQSQQASEA IEPAATDNEN DAPKPSLSAS
201: LPLVSQTTTP RLTPPGSPPI LSASGTPKTT SRPISPRRHS VSFATTRGMF DDTRSSISIS EPGSQTARTR VDGKEFFRQV RSRLSYEQFG AFLGNVKDLN
301: AHKQTREETL RKAEEIFGGD NRDLYVIFEG LITRNAH

Arabidopsis Description

Uncharacterized protein At4g15545 [Source:UniProtKB/Swiss-Prot;Acc:Q93W28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.