Factsheet for Bra033493.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003342.1-P
Bra004879.1-P
Bra040332.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15545.1	Bra004879.1-P	AT2G44950.1	21798944
AT4G15545.1	Bra040332.1-P	AT2G44950.1	21798944
AT4G15545.1	Bra003342.1-P	AT3G58560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22903	Canola	nucleus	97.91	97.91
CDY65145	Canola	nucleus	93.73	94.01
AT4G15545.1	Thale cress	nucleus	83.58	83.09
VIT_05s0020g02240.t01	Wine grape	nucleus	59.1	59.64
KRH02166	Soybean	nucleus	59.7	58.48
KRH11308	Soybean	nucleus	57.91	58.43
KRH50950	Soybean	nucleus	60.0	58.43
Solyc01g080510.2.1	Tomato	nucleus	57.31	58.36
PGSC0003DMT400081752	Potato	nucleus	57.01	57.88
Os05t0406000-01	Rice	plasma membrane	28.06	54.02
GSMUA_Achr11P...	Banana	cytosol	50.45	50.75
TraesCS1A01G254400.1	Wheat	cytosol	47.76	47.62
TraesCS1D01G253800.1	Wheat	cytosol	47.76	47.62
TraesCS1B01G263900.1	Wheat	cytosol	47.46	47.32
Zm00001d010314_P001	Maize	nucleus	46.27	45.99
Zm00001d038155_P001	Maize	nucleus	45.97	45.16
KXG21969	Sorghum	cytosol	46.87	40.05
Bra040781.1-P	Field mustard	nucleus	36.12	39.54
Bra026043.1-P	Field mustard	cytosol	36.72	37.16

Protein Annotations

EnsemblPlants:Bra033493.1	EnsemblPlants:Bra033493.1-P	EnsemblPlantsGene:Bra033493	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0022857	GO:GO:0055085
InterPro:WAT1-related	ncoils:Coil	PANTHER:PTHR31218	PANTHER:PTHR31218:SF43	SEG:seg	UniParc:UPI0002544AA1
UniProt:M4EXF6	MapMan:13.7.2.4	:	:	:	:

Description

AT4G15545 (E=8e-139) | unknown protein

Coordinates

chrA01:-:11609088..11610829

Molecular Weight (calculated)

36873.6 Da

IEP (calculated)

4.708

GRAVY (calculated)

-0.681

Length

335 amino acids

Sequence
(BLAST)

001: MSDVEQEEET SSAVRGSISF DLPEEVLQVL PSDPFEQLDV ARKITSIALS TRVSALESES SDLRELLAEK DNQIAELQSH VESLDSSLSD ALQKLSLAED
101: EKENLVRENS SLSSTVKRLQ RDVSKLEGFR KTLMMSLQDD DQNAGTTQII AKPTPNDEDS PFQPSRHSSI QSQASEAVEP AAVDNENEAA PKPSLSNSLP
201: LVSQTATPRL TPPGSPPALS ASSTPKTTSR PISPRRHSVS FSTTRGMFDD NRSSISISEP GSHTGRTRVD GKEFFRQVRS RLSYEQFGAF LGNVKDLNAH
301: KQTKDETLRK AEEIFGTDNR DLYVIFEGLI TRNAH

Best Arabidopsis Sequence Match ( AT4G15545.1 )
(BLAST)

001: MSEIEEEEEE GSASAITGSR SFDLPDELLQ VLPSDPFEQL DVARKITSIA LSTRVSALES ESSDLRELLA EKEKEFEELQ SHVESLEASL SDAFHKLSLA
101: DGEKENLIRE NASLSNTVKR LQRDVSKLEG FRKTLMMSLQ DDDQNAGTTQ IIAKPTPNDD DTPFQPSRHS SIQSQQASEA IEPAATDNEN DAPKPSLSAS
201: LPLVSQTTTP RLTPPGSPPI LSASGTPKTT SRPISPRRHS VSFATTRGMF DDTRSSISIS EPGSQTARTR VDGKEFFRQV RSRLSYEQFG AFLGNVKDLN
301: AHKQTREETL RKAEEIFGGD NRDLYVIFEG LITRNAH

Arabidopsis Description

Uncharacterized protein At4g15545 [Source:UniProtKB/Swiss-Prot;Acc:Q93W28]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.