Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63493 | Canola | nucleus | 100.0 | 100.0 |
| AT1G56080.1 | Thale cress | nucleus | 75.49 | 74.52 |
| Os03t0659800-01 | Rice | plastid | 25.49 | 59.54 |
| Zm00001d029987_P001 | Maize | cytosol | 17.32 | 54.64 |
| KRH13038 | Soybean | nucleus | 60.46 | 54.57 |
| VIT_19s0027g01640.t01 | Wine grape | nucleus | 60.78 | 54.39 |
| KRH44865 | Soybean | nucleus | 60.13 | 54.28 |
| PGSC0003DMT400056890 | Potato | nucleus | 58.5 | 52.34 |
| Bra026043.1-P | Field mustard | cytosol | 56.54 | 52.27 |
| Solyc10g005580.2.1 | Tomato | nucleus | 58.5 | 52.19 |
| PGSC0003DMT400029232 | Potato | nucleus | 58.5 | 52.19 |
| Solyc07g066520.2.1 | Tomato | nucleus | 59.15 | 50.14 |
| Os04t0616000-01 | Rice | nucleus | 50.65 | 49.68 |
| Zm00001d033261_P001 | Maize | cytosol | 12.75 | 49.37 |
| GSMUA_Achr9P26210_001 | Banana | cytosol | 54.58 | 48.69 |
| TraesCS2D01G416200.1 | Wheat | cytosol | 52.29 | 48.34 |
| TraesCS2A01G419200.1 | Wheat | cytosol | 51.96 | 48.04 |
| TraesCS2B01G437900.2 | Wheat | cytosol | 51.96 | 47.6 |
| Zm00001d026302_P002 | Maize | nucleus | 50.98 | 47.13 |
| Zm00001d002315_P003 | Maize | cytosol | 50.98 | 46.99 |
| EES12856 | Sorghum | nucleus | 50.98 | 46.29 |
| EER91123 | Sorghum | cytosol | 51.63 | 45.66 |
| OQU87614 | Sorghum | cytosol | 51.63 | 45.27 |
| Zm00001d013624_P001 | Maize | cytosol | 50.65 | 45.19 |
| Zm00001d033465_P001 | Maize | cytosol | 50.33 | 45.03 |
| HORVU3Hr1G074720.1 | Barley | cytosol | 47.39 | 44.75 |
| Os01t0768300-00 | Rice | cytosol | 50.33 | 44.38 |
| TraesCS4B01G016300.1 | Wheat | cytosol | 49.02 | 43.86 |
| TraesCS4D01G014700.1 | Wheat | cytosol | 48.69 | 43.7 |
| TraesCS4A01G297400.1 | Wheat | cytosol | 47.39 | 43.28 |
| GSMUA_Achr6P20060_001 | Banana | nucleus | 47.06 | 42.73 |
| TraesCS3D01G303400.1 | Wheat | nucleus | 48.37 | 39.57 |
| TraesCS3A01G298500.1 | Wheat | nucleus | 47.39 | 38.87 |
| TraesCS3B01G338000.1 | Wheat | nucleus | 47.39 | 38.67 |
| Bra033493.1-P | Field mustard | nucleus | 39.54 | 36.12 |
| Zm00001d043333_P001 | Maize | mitochondrion | 40.2 | 34.65 |
| Zm00001d043760_P001 | Maize | cytosol | 11.44 | 32.41 |
| HORVU2Hr1G098580.1 | Barley | cytosol | 32.35 | 26.68 |
| Zm00001d019442_P001 | Maize | cytosol | 13.73 | 26.09 |
| Zm00001d003628_P001 | Maize | plastid | 11.44 | 18.62 |
| Zm00001d038230_P001 | Maize | cytosol | 14.38 | 18.33 |
Protein Annotations
| EnsemblPlants:Bra040781.1 | EnsemblPlants:Bra040781.1-P | EnsemblPlantsGene:Bra040781 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005623 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0022857 | GO:GO:0055085 | InterPro:WAT1-related | ncoils:Coil | PANTHER:PTHR31218 | PANTHER:PTHR31218:SF134 |
| SEG:seg | UniParc:UPI000253E8E4 | UniProt:M4FI52 | MapMan:13.7.2.4 | : | : |
Description
AT1G56080 (E=1e-108) | unknown protein
Coordinates
chrScaffold000257:-:9007..10638
Molecular Weight (calculated)
34008.6 Da
IEP (calculated)
9.463
GRAVY (calculated)
-0.781
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQPDFSLSD EILAVIPTDP YEQLDLARKI TSMAIASRVS NLESQVSVLT QKLRDKDKLI DDLEGRASSF ERLYHEAGSS LKNALDENMK LRQERDSLAI
101: TAKKLGRDYA KLEAFKRQLM QSLNDENPSQ IDSTDVRDKD ENSNGLSTLD SFSNNNNQGL RQRASLTPPG LTPSGTPKMV SAGGSPRSYS AASSPKLFSG
201: AASPTASQYD HIRMWSSSSQ QSSVPNSPPR SHSTSARHAR IDGKEFFRQA RSRLSYEQFS AFLANIKELN ARKQSREETL RKSEEIFGTE NNDLYISFKG
301: LLTSGR
101: TAKKLGRDYA KLEAFKRQLM QSLNDENPSQ IDSTDVRDKD ENSNGLSTLD SFSNNNNQGL RQRASLTPPG LTPSGTPKMV SAGGSPRSYS AASSPKLFSG
201: AASPTASQYD HIRMWSSSSQ QSSVPNSPPR SHSTSARHAR IDGKEFFRQA RSRLSYEQFS AFLANIKELN ARKQSREETL RKSEEIFGTE NNDLYISFKG
301: LLTSGR
001: MSQSGGDFNL SDEILAVIPT DPYDQLDLAR KITSMAIASR VSNLESQVSG LRQKLLEKDR LVHELEDRVS SFERLYHEAD SSLKNVVDEN MKLTQERDSL
101: AITAKKLGRD YAKLEAFKRQ LMQSLNDDNP SQTETADVRM VPRGKDENSN GSYSNNEGLS EARQRQSMTP QFSPAFTPSG TPKILSTAAS PRSYSAASSP
201: KLFSGAASPT SSHYDIRMWS STSQQSSVAN SPPRSHSVSA RHPRIDGKEF FRQARSRLSY EQFSAFLANI KELNARKQGR EETLQKAEEI FGKENNDLYI
301: SFKGLLTSGR
101: AITAKKLGRD YAKLEAFKRQ LMQSLNDDNP SQTETADVRM VPRGKDENSN GSYSNNEGLS EARQRQSMTP QFSPAFTPSG TPKILSTAAS PRSYSAASSP
201: KLFSGAASPT SSHYDIRMWS STSQQSSVAN SPPRSHSVSA RHPRIDGKEF FRQARSRLSY EQFSAFLANI KELNARKQGR EETLQKAEEI FGKENNDLYI
301: SFKGLLTSGR
Arabidopsis Description
At1g56080 [Source:UniProtKB/TrEMBL;Acc:Q0IGM5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.